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E-GEOD-36773 - Expression data from primary breast tumors (IJB+OXF)

Released on 30 March 2012, last updated on 11 April 2012
Homo sapiens
Samples (49)
Array (1)
Protocols (6)
Frozen tissue specimens from primary breast tumors were collected under IRB-approved protocols from 2 medical centers and profiled using Affymetrix U133 series expression microarrays. This cohort comprises of two subcohorts derived from the Institute Jules Bordet (IJB), Brussels (n=41) (2002) and Guys Hospital, London (n=7) (2003). Dr. Christos Sotiriou (Institute Jules Bordet) directed the microarray work in Brussels. A publication describing the generation of these data is not yet available. However, these data can be used alongside other Affymetrix breast tumour data sets to form large meta-cohorts for breast cancer research, as was done in Lasham et. al. J Natl Cancer Inst. 2012 Jan 18;104(2):133-146. Frozen tumor tissues comprising of >60% tumor cellularity were extracted for total RNA and hybridized on Affymetrix microarrays. Clinical data was requested, but not provided by submitter
Experiment type
transcription profiling by array 
Cris Print <>, Christos Sotiriou, Lance D Miller
Investigation descriptionE-GEOD-36773.idf.txt
Sample and data relationshipE-GEOD-36773.sdrf.txt
Raw data (2),
Processed data (1)
Array designA-AFFY-33.adf.txt
R ExpressionSetE-GEOD-36773.eSet.r