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E-GEOD-35827 - ChIP-chip of RNA Polymerase (RNAP) and RpoD in Salmonella enterica serovar Typhimurium strain SL1344

Status
Released on 16 February 2012, last updated on 2 May 2014
Organism
Salmonella enterica subsp. enterica serovar Typhimurium
Samples (10)
Array (1)
Protocols (8)
Description
ChIP-on-chip analysis of RNAP and RpoD binding to the Salmonella enterica serovar Typhimurium chromosome demonstrated a high degree of overlap between RNAP and RpoD binding and provided us with important insights into the global distribution of these factors. Furthermore this data was correlated with information on the location of 1873 transcription start sites identified by RNA-Seq technology, thereby providing a detailed transcriptional map of Salmonella Typhimurium. Analysis of RNAP, RNAP-Rifampicin and and RpoD binding in Luria Broth (LB)
Experiment type
ChIP-chip by tiling array 
Contacts
Shane Dillon <scdillon@tcd.ie>, Andrew D Cameron, Carsten Kroger, Charles J Dorman, Jay C Hinton, Karsten Hokamp, Shane C Dillon
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-35827.idf.txt
Sample and data relationshipE-GEOD-35827.sdrf.txt
Raw data (1)E-GEOD-35827.raw.1.zip
Processed data (1)E-GEOD-35827.processed.1.zip
Array designA-GEOD-10008.adf.txt
Links