Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-35731 - Expression data from Arid4b knockdown cell lines

Status
Released on 23 April 2012, last updated on 30 April 2012
Organism
Mus musculus
Samples (5)
Array (1)
Protocols (8)
Description
High Arid4b promotes mammary tumor growth and metastasis in mouse model systems, and is associated with poor metastasis-free survival in human breast cancer patients. Through shRNA-mediated knockdown, we demonstrated that loss of Arid4b significantly inhibits the ability of mouse breast cancer cells to metastasize to the lungs. We performed microarray expression and subsequent network analysis to identify genes diferentially regulated as a consequence of Arid4b knockdown. The highly metastatic mouse breast cancer cell line 6DT1 was transduced with lentiviral shRNAs targeting Arid4b (RMM4534-NM_194262, Open Biosystems) or scrambled control in the same pLKO.1 vector backbone. Stably transduced cells were selected with puromycin, then total RNA was isolated from pooled clones.
Experiment type
transcription profiling by array 
Contacts
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-35731.idf.txt
Sample and data relationshipE-GEOD-35731.sdrf.txt
Raw data (1)E-GEOD-35731.raw.1.zip
Processed data (1)E-GEOD-35731.processed.1.zip
Array designA-AFFY-130.adf.txt
R ExpressionSetE-GEOD-35731.eSet.r
Links