E-GEOD-3564 - Genomic comparison of Salmonella enterica serovars and Salmonella bongori

Status
Submitted on 3 November 2005, released on 3 November 2005, last updated on 18 October 2011
Organism
Salmonella enterica subsp. enterica serovar Typhimurium
Samples (128)
Array (1)
Protocols (2)
Description
This experiment set includes 64 arrays representing 26 serovars and strains of Salmonella spp. including many representatives of subspecies I, Arizona from subsp. IIIa, and S. bongori from subsp. V. The genomic DNA from all strains were labeled with Cy5 and hybridized against an equal amount (1.5 ug) of S. typhimurium SL1344 reference genomic DNA that was labeled with Cy3, all on an S. typhimurium SL1344 spotted DNA microarray. Most of the arrays are present in triplicate to account for variability in probe generation, hybridization, and slide quality. Several are represented in duplicate, and a few without any replicates. Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Computed
Experiment type
unknown experiment type 
Contacts
Citation
Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar typhimurium DNA microarray. Chan K, Baker S, Kim CC, Detweiler CS, Dougan G, Falkow S.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-3564.idf.txt
Sample and data relationshipE-GEOD-3564.sdrf.txt
Processed data (1)E-GEOD-3564.processed.1.zip
Array designA-GEOD-3048.adf.txt
Links