Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-35566 - Expression profiles of a panel of MSS and MSI colon cancer cell lines

Status
Released on 7 February 2012, last updated on 15 February 2012
Organism
Homo sapiens
Samples (19)
Array (1)
Protocols (8)
Description
Expression profiling was used to identify genes differentially expressed in MSS (microsatellite stable) and MSI (microsatellite unstable) colon cancer cell lines. Data submitted in support of manuscript entitled Villin expression is frequently lost in poorly differentiated colon cancer, Diego Arango, Sheren Al-Obaidi, David S. Williams, Jose Dopeso, Rocco Mazzolini, Georgia Corner, Do-Sun Byun, Carmel Murone, Lars Tögel, Nikolajs Zeps, Lauri A. Aaltonen, Barry Iacopetta and John M. Mariadason, American Journal of Pathology, 2012. 5 microsatellite stable (MSS) and 5 microsatellite unstable (MSI) colon cancer cell lines profiled. Each cell line grown and arrayed in duplicate, and the duplicates averaged for each cell line before calculating means for MSS and MSI lines.
Experiment type
transcription profiling by array 
Contacts
John Mariadason
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-35566.idf.txt
Sample and data relationshipE-GEOD-35566.sdrf.txt
Raw data (1)E-GEOD-35566.raw.1.zip
Processed data (1)E-GEOD-35566.processed.1.zip
Additional data (1)E-GEOD-35566.additional.1.zip
Array designA-AFFY-44.adf.txt
R ExpressionSetE-GEOD-35566.eSet.r
Links