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E-GEOD-35312 - Integrative array-based approach identifies MZB1 as a frequently methylated putative tumor-suppressor in hepatocellular carcinoma (MeDIP)

Status
Released on 30 March 2012, last updated on 4 May 2014
Organism
Homo sapiens
Samples (8)
Array (1)
Protocols (7)
Description
The analysis of DNA methylation profiles was performed by methylated DNA immunoprecipitation (MeDIP) using anti-5-methylcytidine antibody (Eurogentec, Seraing, Belgium) followed by the Human 244K Agilent CpG island microarray (Agilent, Santa Clara, CA) Genomic DNAs from Hep3B, HepG2 and HuH-7 cells were used for cancer samples and that from a normal liver tissue from surgical sample of colon cancer metastasis, as a control sample (C20)
Experiment type
methylation profiling by array 
Contacts
satoshi matsumura <s-matsumura@yokohamah.rofuku.go.jp>, Issei Imoto, Johji Inazawa, Ken-ichi Kozaki, Mayuko Furuta, Michiie Sakamoto, Shigeki Arii, Shinji Tanaka, Takeshi Matsui, Tomoki Muramatsu
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-35312.idf.txt
Sample and data relationshipE-GEOD-35312.sdrf.txt
Raw data (1)E-GEOD-35312.raw.1.zip
Processed data (1)E-GEOD-35312.processed.1.zip
Array designA-GEOD-4126.adf.txt
Links