E-GEOD-3460 - HPEC senescent vs immortalized cells

Status
Submitted on 16 October 2005, released on 18 October 2005, last updated on 27 March 2012
Organism
Homo sapiens
Samples (24)
Arrays (2)
Protocols (2)
Description
Cellular senescence forms a barrier that inhibits the acquisition of an immortal phenotype, a critical feature in tumorigenesis. The inactivation of multiple pathways that positively regulate senescence are required for immortalization. To identify these pathways in an unbiased manner, we performed DNA microarray analyses to assess the expression of 20,000 genes in human prostate epithelial cells (HPECs) passaged to senescence. These gene expression patterns were then compared with those of HPECs immortalized with the human Papillomavirus 16 E7 oncoprotein. Senescent cells display gene expression patterns that reflect their nonproliferative, differentiated phenotype and express secretory proteases and extracellular matrix components. A comparison of genes transcriptionally up-regulated in senescence to those in which expression is significantly down-regulated in immortalized HPECs identified three genes: the chemokine BRAK, DOC1, and a member of the insulin-like growth factor axis, IGFBP-3. Expression of these genes is found to be uniformly lost in human prostate cancer cell lines and xenografts, and previously, their inactivation was documented in tumor samples. Thus, these genes may function in novel pathways that regulate senescence and are inactivated during immortalization. These changes may be critical not only in allowing cells to bypass senescence in vitro but in the progression of prostate cancer in vivo. Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Computed
Experiment type
unknown experiment type 
Contacts
Citation
Novel pathways associated with bypassing cellular senescence in human prostate epithelial cells. Schwarze SR, DePrimo SE, Grabert LM, Fu VX, Brooks JD, Jarrard DF.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-3460.idf.txt
Sample and data relationshipE-GEOD-3460.sdrf.txt
Processed data (1)E-GEOD-3460.processed.1.zip
Array designsA-GEOD-2937.adf.txt, A-GEOD-2947.adf.txt
Links