ArrayExpress

elav_10to12h_1.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

toll10b_02to04h_2.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

D. melanogaster embryos were collected and aged on yeasted apple juice plates at 25 °C and 60 % humidity.

mef2_06to08h_1.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

mRNA-seq: polyA mRNA was purified from total RNA in two consecutive rounds of oligo(dT) selection. After RNA fragmentation and reverse transcription sequencing libraries were prepared following Illumina's instructions (see ChIP-seq)

mef2_14to17h_2.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

mef2_14to17h_1.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

mef2_10to12h_2.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

mef2_10to12h_1.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

mef2_08to10h_2.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

mef2_08to10h_1.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

mef2_06to08h_2.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

elav_14to17h_2.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

toll10b_02to04h_1.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file

elav_14to17h_1.bam; genome build: dm3 Reads were aligned to the UCSC dm3 genome using Tophat with a FlyBase release 5.28 GFF annotation file