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E-GEOD-32714 - Transcriptional landscape of Candida parapsilosis

Status
Released on 30 November 2011, last updated on 3 April 2013
Organism
Candida parapsilosis
Samples (26)
Protocols (3)
Description
We used next generation sequencing (RNA-seq) to determine the transcriptional profile of C. parapsilosis growing in several conditions including different media, temperatures and oxygen concentrations. We have 37 Samples representing BMW and YPD media, 1% and 21% oxygen, 30 and 37 degree celsius temperature, and CLIB214 and CDupc5 strains.
Experiment type
RNA-seq of coding RNA 
Contacts
Alessandro Guida, Chen Ding, Claudia Lindstaedt, David Harris, Desmond G Higgins, Geraldine Butler, Matthew Berriman, Sarah L Maguire
Citation
Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis. Guida A, Lindst�dt C, Maguire SL, Ding C, Higgins DG, Corton NJ, Berriman M, Butler G. , PMID:22192698
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-32714.idf.txt
Sample and data relationshipE-GEOD-32714.sdrf.txt
Processed data (26)Click to browse processed data
Links