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E-GEOD-31401 - RNA-Seq on SOLiD platform of DrosDel deficiency and w1118 flies

Status
Released on 3 April 2012, last updated on 3 May 2014
Organism
Drosophila melanogaster
Samples (16)
Protocols (4)
Description
RNA-Seq reads of DrosDel deficiency (Df/+) and parental strain diploid flies along with spike-in controls was performed on the SOLiD platform. Samples are named in this dataset according to the following sample naming scheme: tissue_genotype shorthand_sex_biological replicate #_platform_technical replicate. We sequenced mRNA from pools of female or male DrosDel and w1118 (parental strain for the Df/+ flies). The same sample was sequenced across two flow cells on the SOLiD platform.
Experiment type
RNA-seq of coding RNA 
Contacts
Brian Oliver, Carlo G Artieri, Dong-Yeon Y Cho, Harold E Smith, Jennifer McDaniel, John H Malone, Justen Andrews, Lichun Jiang, Marc Salit, Nicolas R Mattiuzzo, Ryan K Dale, Sarah Munro, Tersa M Przytycka
Citation
Mediation of Drosophila autosomal dosage effects and compensation by network interactions. Malone JH, Cho DY, Mattiuzzo NR, Artieri CG, Jiang L, Dale RK, Smith HE, McDaniel J, Munro S, Salit M, Andrews J, Przytycka TM, Oliver B. , PMID:22531030
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
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