Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-31028 - Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage

Status
Released on 1 September 2011, last updated on 14 September 2011
Organism
Mus musculus
Samples (6)
Array (1)
Protocols (8)
Description
Mouse hair follicles (HFs) undergo synchronized cycles. Cyclical regeneration and hair growth is fueled by stem cells (SCs). During the rest phase, the HF-SCs remain quiescent due to extrinsic inhibitory signals within the niche. As activating cues accumulate, HF-SCs become activated, proliferate, and grow downward to form transient-amplifying matrix progenitor cells. We used microarrays to detect the relative levels of global gene expression underlying the states of hair follicle stem cells and their transient-amplifying progeny before differentiation. Quiescent hair follicle stem cells (qHF-SCs), activated hair follicle stem cells (aHF-SCs) and transient-amplifying matrix cells (HF-TACs) were FACS-purified for RNA extraction and hybridization on Affymetrix microarrays. To obtain homogeneous populations of expression profiles, we applied the FACS technique to purify SC and TACs according to their cell surface markers.
Experiment type
transcription profiling by array 
Contacts
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-31028.idf.txt
Sample and data relationshipE-GEOD-31028.sdrf.txt
Raw data (1)E-GEOD-31028.raw.1.zip
Processed data (1)E-GEOD-31028.processed.1.zip
Array designA-AFFY-45.adf.txt
R ExpressionSetE-GEOD-31028.eSet.r
Links