Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-30362 - Transcription profiling by array of Drosophila larvae homozygous mutant for pex1

Status
Released on 2 July 2011, last updated on 18 September 2015
Organism
Drosophila melanogaster
Samples (6)
Array (1)
Protocols (7)
Description
Human peroxisome biogenesis disorders are lethal genetic disease in which abnormal peroxisome assembly compromises overall peroxisome and cellular function. Peroxisomes are ubiquitous membrane-bound organelles involved in several important biochemical processes, notably lipid metabolism and the use of reactive oxygen species for detoxification. Using cultured cells, we systematically characterized the peroxisome assembly phenotypes associated with dsRNA-mediated knockdown of 14 predicted Drosophila homologs of PEX genes (encoding peroxins; required for peroxisome assembly and linked to peroxisome biogenesis disorders), and confirmed that at least 13 of them are required for normal peroxisome assembly. We also demonstrate the relevance of Drosophila as a genetic model for the early developmental defects associated with the human peroxisome biogenesis disorders. Mutation of the PEX1 gene is the most common cause of peroxisome biogenesis disorders and is one of the causes of the most severe form of the disease, Zellweger syndrome. Inherited mutations in Drosophila Pex1 correlate with reproducible defects during early development. Notably, Pex1 mutant larvae exhibit abnormalities that are analogous to those exhibited by Zellweger syndrome patients, including developmental delay, poor feeding, severe structural abnormalities in the peripheral and central nervous systems, and early death. Finally, microarray analysis defined clusters of genes whose expression varied significantly between wild-type and mutant larvae, implicating peroxisomal function in neuronal development, innate immunity, lipid and protein metabolism, gamete formation, and meiosis. Expression profiles were analyzed in triplicate from whole larvae of wild-type and pex1 homozygous mutant Drosophila.
Experiment type
transcription profiling by array 
Contacts
Fred David Mast <fmast@ualberta.ca>, Andrew J Simmonds, Fred D Mast, Jing Li, Maninder K Virk, Richard A Rachubinski, Sarah C Hughes
Citation
A Drosophila model for the Zellweger spectrum of peroxisome biogenesis disorders. Mast FD, Li J, Virk MK, Hughes SC, Simmonds AJ, Rachubinski RA.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-30362.idf.txt
Sample and data relationshipE-GEOD-30362.sdrf.txt
Raw data (1)E-GEOD-30362.raw.1.zip
Processed data (1)E-GEOD-30362.processed.1.zip
Array designA-AFFY-35.adf.txt
Links