Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-29372 - gene profiling of turnip crinkle virus (tcv) sirna-Gene profiling of Turnip Crinkle Virus (TCV) siRNA in A.thaliana

Status
Released on 31 March 2012, last updated on 3 May 2014
Organism
Arabidopsis thaliana
Samples (96)
Array (1)
Protocols (78)
Description
rs10-05_tcv - gene profiling of turnip crinkle virus (tcv) sirna - 1. What are the genes (including miRNA precursors) that are differentially regulated in a set of viral siRNA in A.thaliana? 2. There are also differentially regulated during an evolution and a fitness process? - This is a plant evolution project on TCV in which, the biological questions are: 1. What are the genes (including miRNA precursors) that are differentially regulated in Col0 and dcl234 mutant in wt conditions? 2. What are the genes (including miRNA precursors) that are differentially regulated in a set of viral siRNA in Col0 and dcl234 mutant? 3. There are also differentially regulated between the plant generations 1 (G1) and 11 (G11)? 4. What are the genes (including miRNA precursors) that are differentially regulated in a set of viral siRNA after fitness experiment? 24 dye-swap - gene knock out,treated vs untreated comparison
Experiment type
transcription profiling by array 
Contacts
Soubigou-Taconnat Ludivine <soubigou@evry.inra.fr>, Ludivine Taconnat, Marie-Laure Martin-Magniette, Sandrine Balzergue, Virginia Ruiz-Ferrer
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-29372.idf.txt
Sample and data relationshipE-GEOD-29372.sdrf.txt
Raw data (1)E-GEOD-29372.raw.1.zip
Processed data (1)E-GEOD-29372.processed.1.zip
Array designA-GEOD-9553.adf.txt
R ExpressionSetE-GEOD-29372.eSet.r
Links