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E-GEOD-29228 - 5q21 tiling array on prostate tumors

Status
Released on 19 December 2011, last updated on 2 May 2014
Organism
Homo sapiens
Samples (16)
Array (1)
Protocols (6)
Description
CGH profiles of prostate tumors on custom designed high resolution arrays tiling chromosome 5q21 A custom high-density Agilent 15k CGH array tiling 5q21 was designed to narrow down the region of deletion at 5q21 to a few genes that could be followed up with functional studies. 8 critical prostate tumors samples with the most focal regions of deletion were chosen to be profiled on the 5q21 tiling array.
Experiment type
comparative genomic hybridization by array 
Contacts
Jonathan R Pollack, Stephanie Huang
Citation
Recurrent deletion of CHD1 in prostate cancer with relevance to cell invasiveness. Huang S, Gulzar ZG, Salari K, Lapointe J, Brooks JD, Pollack JR. , PMID:22179824
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-29228.idf.txt
Sample and data relationshipE-GEOD-29228.sdrf.txt
Raw data (1)E-GEOD-29228.raw.1.zip
Processed data (1)E-GEOD-29228.processed.1.zip
Array designA-GEOD-13519.adf.txt
R ExpressionSetE-GEOD-29228.eSet.r
Links