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E-GEOD-28377 - Histone H3 lysine 4 trimethylation of miRNA genes in HMEC and HMF

Status
Released on 5 April 2011, last updated on 3 May 2014
Organism
Homo sapiens
Samples (12)
Array (1)
Protocols (8)
Description
Normal cell type specific histone H3 lysine 4 trimethylation of miRNA genes. HMEC and HMF represent two distinct differentiated cell type present in mammary gland each with a distinct phenotype, a distinct epigenotype as well as distinct miRNA expression pattern. The aim of the study was to determine how epigenetic modifications including histone H3 lysine 4 trimethylation affect miRNA expression. Two cell types HMEC vs. HMF. Biological replicates: 3 pairs of HMEC-HMF of 3 distinct genotypes. Immunoprecipitation using anti-histone H3 trimethylated at lysine 4 (05-745, Upstate).
Experiment type
ChIP-chip by tiling array 
Contacts
Lukas Vrba <geo@ncbi.nlm.nih.gov>, Bernard W Futscher, James C Garbe, Martha R Stampfer
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-28377.idf.txt
Sample and data relationshipE-GEOD-28377.sdrf.txt
Raw data (1)E-GEOD-28377.raw.1.zip
Processed data (1)E-GEOD-28377.processed.1.zip
Array designA-GEOD-13339.adf.txt
R ExpressionSetE-GEOD-28377.eSet.r
Links