Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-28152 - Pseudomonas aeruginosa gene expression in artificial sputum medium using a broad capture array designated the PANarray

Status
Released on 15 July 2011, last updated on 2 August 2011
Organism
Pseudomonas aeruginosa
Samples (8)
Array (1)
Protocols (8)
Description
The PANarray design (GPL13324) contains the genes of eight P. aeruginosa genomes in non-redundant format, thus allowing identification of expression of non-PAO1 and other P. aeruginosa genes. For the series GSE28152, isogenic isolates were sequentially collected from two cystic fibrosis (CF) patients several years apart. The isolates had not been eradicated in the meantime and represent persister strains. One was an Australian Epidemic Strain-1 isolate and the other a non-epidemic strain. Strains were cultured in an artificial sputum medium (ASMDM) closely resembling CF sputum.
Experiment type
transcription profiling by array 
Contacts
Jim Manos <jim.manos@sydney.edu.au>, Barbara Rose, Cynthia Whitchurch, Dane Parker, Jim Manos, Lynne Turnbull, Sharna Naughton, Torsten Seemann
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-28152.idf.txt
Sample and data relationshipE-GEOD-28152.sdrf.txt
Raw data (1)E-GEOD-28152.raw.1.zip
Processed data (1)E-GEOD-28152.processed.1.zip
Array designA-GEOD-13324.adf.txt
Links