Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-2742 - Transcription profiling by array of human HT29 colorectal adenocarcinoma cells after treatment with apratoxin A

Status
Released on 27 October 2007, last updated on 22 March 2012
Organism
Homo sapiens
Samples (27)
Array (1)
Protocols (2)
Description
Total RNA was extracted from apratoxin A or vehicle treated HT29 cells using the RNeasy Mini Kit (Qiagen). Probe values from CEL files were condensed to probe sets using Rosetta Resolver software. Resolver ANOVA analysis was then performed between groups. Experiment Overall Design: 2 doses were compared to vehicle at 3 time points. Each time point had its own vehicle control
Experiment types
transcription profiling by array, co-expression, compound treatment, dose response, in vitro, stimulus or stress, time series
Contact
Citation
A functional genomics approach to the mode of action of apratoxin A. Hendrik Luesch, Sumit K Chanda, R Marina Raya, Paul D DeJesus, Anthony P Orth, John R Walker, Juan Carlos Izpisúa Belmonte, Peter G Schultz. , PMID:16474387
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-2742.idf.txt
Sample and data relationshipE-GEOD-2742.sdrf.txt
Raw data (1)E-GEOD-2742.raw.1.zip
Processed data (1)E-GEOD-2742.processed.1.zip
Array designA-AFFY-33.adf.txt
R ExpressionSetE-GEOD-2742.eSet.r
Links