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E-GEOD-2735 - ENCODE: two phosphorylation states of RNAP II ChIP-chip from HeLa cells

Status
Submitted on 1 June 2005, released on 10 June 2010, last updated on 27 March 2012
Organism
Homo sapiens
Samples (18)
Array (1)
Protocols (2)
Description
Two phosphorylation states of RNAPII in HeLa cells Keywords: ChIP-chip Study of RNAPII binding patterns to ENCODE regions. 3 arrays using 8wg16 antibody, hypophosphoryated PolII, 3 arrays using 4H8 antibody, phosphorylated PolII CTD, and 6 input DNA arrays.
Experiment types
transcription profiling by array, ChIP-chip by tiling array 
Contacts
Alexander Brodsky <alex_brodsky@brown.edu>, Benjamin Keenan, Clifford Meyer, Edward Fox, Giles Hall, Ian Swinburne, Pamela Silver, Xiaole Liu
Citation
Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells. Brodsky AS, Meyer CA, Swinburne IA, Hall G, Keenan BJ, Liu XS, Fox EA, Silver PA.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-2735.idf.txt
Sample and data relationshipE-GEOD-2735.sdrf.txt
Raw data (2)E-GEOD-2735.raw.1.zip, E-GEOD-2735.raw.2.zip
Array designA-AFFY-44.adf.txt
R ExpressionSetE-GEOD-2735.eSet.r
Links