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E-GEOD-27281 - Transcription profiling by array of Arabidopsis pistils after pollination

Status
Released on 14 February 2011, last updated on 26 January 2012
Organism
Arabidopsis thaliana
Samples (10)
Array (1)
Protocols (8)
Description
Plant reproduction depends on the concerted activation of many genes to assure the correct communication between pollen and pistil. Here we queried the whole transcriptome of Arabidopsis thaliana in order to identify genes with specific reproductive functions. We used the ATH1 whole genome array to profile wild-type unpollinated pistils and unfertilized ovules in comparison with the expression profile of pistils 0.5, 3.5 and 8.0 hours after pollination KEYWORDS: time course Flowers at the developmental stage 12c were emasculated 24 hours before pollination. Pistils were collected at 0, 0.5, 3.5 and 8 Hours After Pollination (HAP) and immediately frozen in liquid nitrogen. Unfertilized ovules were collected by the funiculus from dissected UP and immediately frozen in liquid nitrogen. To minimize biological variation 20 pistils were collected from a minimum of 10 plants and for ovule isolation 50 pistils were used from about 30 plants to isolate approximately 1500 ovules for each replicate experiment.
Experiment type
transcription profiling by array 
Contacts
Filipe Borges <geo@ncbi.nlm.nih.gov>, José A Feijó, Jörg D Becker, Leonor C Boavida
Citation
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-27281.idf.txt
Sample and data relationshipE-GEOD-27281.sdrf.txt
Raw data (1)E-GEOD-27281.raw.1.zip
Processed data (1)E-GEOD-27281.processed.1.zip
Array designA-AFFY-2.adf.txt
R ExpressionSetE-GEOD-27281.eSet.r
Links