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E-GEOD-27070 - affy_zeawall_ril2_maize: ZeaWall Project, defavorable parent F271

Status
Released on 30 August 2012, last updated on 4 October 2012
Organism
Zea mays
Samples (4)
Array (1)
Protocols (11)
Description
affy_zeawall_ril2_maize - affy_zeawall_ril2_maize - Four major QTL explaining lignin content and cell wall degradability variation have been identified in the F288 x F271 RIL progeny (Roussel et al., 2002, Maydica 47: 9-20). Gene expression has been considered as a way in identification of candidate gene underlying QTL. Five lines chosen for their allelic pattern at four main QTL were considered for expression studies, two lines with all four favorable alleles (RIL99, RIL54), two lines with the unfavorable allele at bin 6.06 QTL position (RIL39 , RIL71), and one line with the unfavorable allele at bin 9.02 QTL position (RIL118). The defavorable parent F271 was studied in complement and is the object of this last array. Expression studies will be investigated in ear internode at two stages (emerging tassel and early silking).-Five lines chosen for their allelic pattern at four main QTL were considered for expression studies, two lines with all four favorable alleles (RIL99, RIL54), two lines with the unfavorable allele at bin 6.06 QTL position (RIL39 , RIL71), and one line with the unfavorable allele at bin 9.02 QTL position (RIL118). The defavorable parent F271 was also studied in complement and is the object of this last array.Expression study will be investigated in ear internode at two stages emerging tassel and early silking stages with two replicates. Plants were cropped at INRA Lusignan (Vienne, France) in 2009 in a bloc design with two four-row replicates. Below-ear internodes of five representative RIL plants of one row in each replicate were harvested at the two stages and pooled. 4 arrays - maize; time course
Experiment type
transcription profiling by array 
Contacts
stephanie huguet <huguet@evry.inra.fr>, Audrey Courtial, Marie-Laure Martin-Magniette, Sandrine Balzergue, Stephanie Huguet, Yves Barrière
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-27070.idf.txt
Sample and data relationshipE-GEOD-27070.sdrf.txt
Raw data (1)E-GEOD-27070.raw.1.zip
Processed data (1)E-GEOD-27070.processed.1.zip
Array designA-AFFY-77.adf.txt
R ExpressionSetE-GEOD-27070.eSet.r
Links