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E-GEOD-25120 - Identifying putative candidate genes and pathways involved in immune responses to porcine reproductive and respiratory syndrome virus (PRRSV) infection

Status
Submitted on 3 November 2010, released on 5 November 2010, last updated on 3 May 2014
Organism
Sus scrofa
Samples (32)
Array (1)
Protocols (8)
Description
This study compares differences in gene expression between RNAs from lung and bronchial lymph node (BLN) tissue of high (H), low (L) PRRSV burden pigs or a pooled reference (R) using the swine protein-annotated long oligonucleotide microarray. Pathway analyses were carried out on a large scale to determine biological processes, pathways and networks that differ between the H, L and R responses. Samples corresponding to animals with High and Low response to PRRSV infection were hyridized in a common reference design
Experiment type
transcription profiling by array 
Contacts
juan p steibel <steibelj@msu.edu>, Joan K Lunney, Juan P Steibel
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-25120.idf.txt
Sample and data relationshipE-GEOD-25120.sdrf.txt
Raw data (1)E-GEOD-25120.raw.1.zip
Processed data (1)E-GEOD-25120.processed.1.zip
Array designA-GEOD-7435.adf.txt
R ExpressionSetE-GEOD-25120.eSet.r
Links