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E-GEOD-24846 - mRNA microarray analysis on young adult zebrafish exposed to benzene, toluene, formaldehyde and a BTF mix

Status
Released on 31 December 2011, last updated on 11 January 2012
Organism
Danio rerio
Samples (5)
Array (1)
Protocols (8)
Description
In order to evaluate the identification of genes and pathways, the global gene expression profiles were assessed in response to three chemicals (benzene (B), toluene (T), formaldehyde (F)) individually and as a BTF mix on zebrafish. We performed whole genome DNA microarray experiments with subsequent quantitative analysis conducted on selected genes. We used synchronized zebrafish populations exposed to B, T, F or a BTF mix, and whole genome microarrays to screen for global changes in zebrafish transcription profiles. Young adults of zebrafish were selected for RNA extraction and hybridization on Affymetrix microarrays.
Experiment type
transcription profiling by array 
Contacts
jinhee choi <jinhchoi@uos.ac.kr>, Jinhee Choi, Myung-Chul Lee, Tae-Soo Chon
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-24846.idf.txt
Sample and data relationshipE-GEOD-24846.sdrf.txt
Raw data (1)E-GEOD-24846.raw.1.zip
Processed data (1)E-GEOD-24846.processed.1.zip
Array designA-AFFY-38.adf.txt
R ExpressionSetE-GEOD-24846.eSet.r
Links