Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-24310 - Canton S Ago1 Immunoprecipitation

Status
Released on 18 October 2010, last updated on 3 April 2013
Organism
Drosophila melanogaster
Samples (1)
Protocols (3)
Description
modENCODE_submission_2744 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Keywords: RIP-seq EXPERIMENT TYPE: RIP-seq. BIOLOGICAL SOURCE: Strain: Canton S; Developmental Stage: Adult Female; Genotype: wild type; Sex: Female; EXPERIMENTAL FACTORS: Adult_ovaries
Experiment type
RNA-seq of non coding RNA 
Contacts
DCC modENCODE <help@modencode.org>, Eric Lai, Gregory Hannon
Citations
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC. , PMID:21177969
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-24310.idf.txt
Sample and data relationshipE-GEOD-24310.sdrf.txt
Processed data (1)E-GEOD-24310.processed.1.zip
Links