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E-GEOD-23470 - H3K4me2-Millipore.S2

Status
Released on 10 August 2010, last updated on 2 May 2014
Organism
Drosophila melanogaster
Samples (4)
Array (1)
Protocols (10)
Description
modENCODE_submission_2655 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determe the locations of 125 chromosomal proteins and histone modifications across the Drosophila melanogaster genome. The proteins and modifications under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using genomic tiling arrays. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Keywords: CHIP-chip EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Cell Line: S2-DRSC; Tissue: embryo-derived cell-line; Developmental Stage: late embryonic stage; Sex: Male; NUMBER OF REPLICATES: 4; EXPERIMENTAL FACTORS: Cell Line S2-DRSC; Antibody H3K4me2-Millipore (target is H3K4me2)
Experiment type
ChIP-chip by tiling array 
Contacts
DCC modENCODE <help@modencode.org>, Aki Minoda, Andrey Gortchakov, Art Alekseyenko, Cameron Kennedy, Gary Karpen, Greg Shanower, Michael Tolstorukov, Mitzi Kuroda, Nicole Riddle, Peter Kharchenko, Peter Park, Sarah Elgin, Vincenzo Pirrotta, Yuri Schwartz
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-23470.idf.txt
Sample and data relationshipE-GEOD-23470.sdrf.txt
Raw data (1)E-GEOD-23470.raw.1.zip
Array designA-AFFY-146.adf.txt
Links