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E-GEOD-23146 - modENCODE_White Lab: genome-wide ChIP data of Trl from E16-24h on Illumina Genome Analyzer

Status
Submitted on 25 July 2010, released on 11 August 2010, last updated on 2 June 2014
Organism
Drosophila melanogaster
Samples (2)
Protocols (3)
Description
This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains genome-wide binding profile of the factor Trl from E16-24h generated by ChIP and analyzed on Illumina Genome Analyzer. Keywords: Epigenetics For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf A validated dataset is comprised of three biological replicates for ChIP-chip experiments and two replicates for ChIP-seq and meet the modENCODE quality standards. The control sample is the chromatin Input used for ChIP. Most factors binding profiles are generated by using specific antibodies for the protein of interest. However, some factors have been tagged by GFP in a transgenic line. In that case, ChIP is generated using an anti-GFP antibody. This submission represents the ChIP-seq component of the study
Experiment types
ChIP-seq, ChIP-seq by high throughput sequencing
Contacts
Nick Bild <nbild@bsd.uchicago.edu>, Kevin P White, Nicholas A Bild, Nicolas Negre
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-23146.idf.txt
Sample and data relationshipE-GEOD-23146.sdrf.txt
Processed data (1)E-GEOD-23146.processed.1.zip
Links