Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-20572 - mRNA profiling of genetically matched ESCs and iPSCs

Status
Released on 28 April 2010, last updated on 6 December 2011
Organism
Mus musculus
Samples (59)
Array (1)
Protocols (8)
Description
Induced pluripotent stem cells (iPSCs) can be generated by enforced expression of defined transcription factors in somatic cells. It remains controversial whether iPSCs are equivalent to blastocyst-derived embryonic stem cells (ESCs). Using genetically matched cells, we found that the overall mRNA expression patterns of these cell types are indistinguishable with the exception of a few transcripts encoded on chromosome 12qF1. iPSCs were derived from somatic tissues of chimeric mice generated with ESCs that carry an inducible cassette encoding for the reprogramming factors myc, Klf4, Oct4 and Sox2.
Experiment type
transcription profiling by array 
Contacts
Konrad Hochedlinger, Matthias Stadtfeld
Citation
Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells. Stadtfeld M, Apostolou E, Akutsu H, Fukuda A, Follett P, Natesan S, Kono T, Shioda T, Hochedlinger K. , PMID:20418860
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-20572.idf.txt
Sample and data relationshipE-GEOD-20572.sdrf.txt
Raw data (1)E-GEOD-20572.raw.1.zip
Processed data (1)E-GEOD-20572.processed.1.zip
Array designA-GEOD-8759.adf.txt
R ExpressionSetE-GEOD-20572.eSet.r
Links