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E-GEOD-20572 - mRNA profiling of genetically matched ESCs and iPSCs

Released on 28 April 2010, last updated on 6 December 2011
Mus musculus
Samples (59)
Array (1)
Protocols (8)
Induced pluripotent stem cells (iPSCs) can be generated by enforced expression of defined transcription factors in somatic cells. It remains controversial whether iPSCs are equivalent to blastocyst-derived embryonic stem cells (ESCs). Using genetically matched cells, we found that the overall mRNA expression patterns of these cell types are indistinguishable with the exception of a few transcripts encoded on chromosome 12qF1. iPSCs were derived from somatic tissues of chimeric mice generated with ESCs that carry an inducible cassette encoding for the reprogramming factors myc, Klf4, Oct4 and Sox2.
Experiment type
transcription profiling by array 
Konrad Hochedlinger, Matthias Stadtfeld
Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells. Stadtfeld M, Apostolou E, Akutsu H, Fukuda A, Follett P, Natesan S, Kono T, Shioda T, Hochedlinger K. , PMID:20418860
Investigation descriptionE-GEOD-20572.idf.txt
Sample and data relationshipE-GEOD-20572.sdrf.txt
Raw data (1)
Processed data (1)
Array designA-GEOD-8759.adf.txt
R ExpressionSetE-GEOD-20572.eSet.r