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E-GEOD-2018 - Transcription profiling of human bronchoalveolar lavage samples collected from lung transplant recipients with rejection states determined at the time of sample collection

Status
Submitted on 27 November 2004, released on 29 August 2007, last updated on 2 May 2014
Organism
Homo sapiens
Samples (34)
Array (1)
Protocols (6)
Description
Bronchoalveolar lavage samples collected from lung transplant recipients. Numeric portion of sample name is an arbitrary patient ID and AxBx number indicates the perivascular (A) and bronchiolar (B) scores from biopsies collected on the same day as the BAL fluid was collected. Several patients have more than one sample in this series and can be determined by patient number followed by a lower case letter. Acute rejection state is determined by the combined A and B score - specifically, a combined AB score of 2 or greater is considered an acute rejection.
Experiment types
transcription profiling by array, co-expression, disease state
Contact
Citation
Gene expression profiling of bronchoalveolar lavage cells in acute lung rejection. Vincent J Gimino, Jeffrey D Lande, Todd R Berryman, Richard A King, Marshall I Hertz. Am J Respir Crit Care Med 168(10):1237-42 (2003)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-2018.idf.txt
Sample and data relationshipE-GEOD-2018.sdrf.txt
Raw data (1)E-GEOD-2018.raw.1.zip
Processed data (1)E-GEOD-2018.processed.1.zip
Array designA-AFFY-33.adf.txt
R ExpressionSetE-GEOD-2018.eSet.r
Links