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E-GEOD-19238 - Expression data for 2 obese subjects from the SibPair cohort with a deletion on 16p11.2

Status
Released on 2 December 2009, last updated on 2 June 2014
Organism
Homo sapiens
Samples (2)
Array (1)
Protocols (6)
Description
We report a highly-penetrant form of obesity, initially observed in 31 heterozygous carriers of a 593kb or larger deletion at 16p11.2 from amongst subjects ascertained for cognitive deficits. Nineteen similar deletions were identified from GWAS data in 16053 individuals from 8 European cohorts; such deletions was absent from healthy non-obese controls and accounted for 0.7% of our morbid obesity cases (p = 6.4x10-8, OR = 43). These findings highlight a promising strategy for identifying missing heritability in obesity and other complex traits, in which insights from rare extreme cases can be used to elucidate the basis for more common phenotypes. The expression data was analysed for 2 obese subjects carrying a deletion on 16p11.2. There are no replicates or controls.
Experiment type
transcription profiling by array 
Contacts
Adam J deSmith, Alexandra I Blakemore, Andrew Walley, David Balding, Jessica L Buxton, Johanna C Andersson, Julia S El-Sayed-Mustafa, Lars Sjöström, Lena M Carlsson, Margareta Jernås, Mario Falchi, Peter Jacobson, Philippe Froguel, Robin G Walters, Sylvia Richardson, Tim Aitman
Citation
A new highly penetrant form of obesity due to deletions on chromosome 16p11.2. Walters RG, Jacquemont S, Valsesia A, de Smith AJ, Martinet D, Andersson J, Falchi M, Chen F, Andrieux J, Lobbens S, Delobel B, Stutzmann F, El-Sayed Moustafa JS, Ch�vre JC, Lecoeur C, Vatin V, Bouquillon S, Buxton JL, Boute O, Holder-Espinasse M, Cuisset JM, Lemaitre MP, Ambresin AE, Brioschi A, Gaillard M, Giusti V, Fellmann F, Ferrarini A, Hadjikhani N, Campion D, Guilmatre A, Goldenberg A, Calmels N, Mandel JL, Le Caignec C, David A, Isidor B, Cordier MP, Dupuis-Girod S, Labalme A, Sanlaville D, B�ri-Dexheimer M, Jonveaux P, Leheup B, Ounap K, Bochukova EG, Henning E, Keogh J, Ellis RJ, Macdermot KD, van Haelst MM, Vincent-Delorme C, Plessis G, Touraine R, Philippe A, Malan V, Mathieu-Dramard M, Chiesa J, Blaumeiser B, Kooy RF, Caiazzo R, Pigeyre M, Balkau B, Sladek R, Bergmann S, Mooser V, Waterworth D, Reymond A, Vollenweider P, Waeber G, Kurg A, Palta P, Esko T, Metspalu A, Nelis M, Elliott P, Hartikainen AL, McCarthy MI, Peltonen L, Carlsson L, Jacobson P, Sj�str�m L, Huang N, Hurles ME, O'Rahilly S, Farooqi IS, M�nnik K, Jarvelin MR, Pattou F, Meyre D, Walley AJ, Coin LJ, Blakemore AI, Froguel P, Beckmann JS. , PMID:20130649
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-19238.idf.txt
Sample and data relationshipE-GEOD-19238.sdrf.txt
Raw data (1)E-GEOD-19238.raw.1.zip
Processed data (1)E-GEOD-19238.processed.1.zip
Array designA-AFFY-44.adf.txt
Links