Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-18983 - Transcription profiling by array of Arabidopsis treated with 2,4,6-trinitrotoluene (TNT)

Status
Released on 17 November 2009, last updated on 30 April 2015
Organism
Arabidopsis thaliana
Samples (6)
Array (1)
Protocols (8)
Description
The aim of this experiment was to identify the genes involved in the detoxification of the toxic pollutant and explosive compound 2,4,6-trinitrotoluene (TNT). Fourteen-day-old, liquid culture grown, Arabidopsis seedlings, ecotype Col0 (NASC stock code N1093), were dosed with 60 uM TNT dissolved in 60 ul dimethyl formamide (DMF) solvent, or 60 ul DMF only. After six hours, RNA was extracted and used for the microarray analysis. Further details and characterisation of glucosyltransferases identified using this method are presented in citation below. 6 samples were used in this experiment
Experiment types
transcription profiling by array, compound treatment
Contacts
Citation
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-18983.idf.txt
Sample and data relationshipE-GEOD-18983.sdrf.txt
Raw data (1)E-GEOD-18983.raw.1.zip
Processed data (1)E-GEOD-18983.processed.1.zip
Array designA-AFFY-2.adf.txt
Links