Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.
E-GEOD-18711 - A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria
Released on 24 June 2010, last updated on 10 June 2011
uncultured Acidobacteria bacterium
Investigation of the phylogenetic diversity of Acidobacteria taxa using PCR amplicons from positive control 16S rRNA templates and total genomic DNA extracted from soil and a soil clay fraction A ten chip study using PCR amplicons from cloned 16S rRNA genes and from diverse soil 16S rRNAs, with PCR primers specific to the Division Acidobacteria. Each chip measures the signal from 42,194 probes (in triplicate) targeting Acidobacteria division, subdivision, and subclades as well as other bacterial phyla. All samples except one (GSM464591) include 2.5 M betaine in the hybridization buffer. Pair files lost due to a computer crash.
Mark R Liles <firstname.lastname@example.org>, Balser Teri, Billor Nedret, George Isabelle, Goodman Robert M., Liles Mark, Manske Brian, Rouillard Jean-Marie, Turkmen Ozgur, Zhang Mingzi