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E-GEOD-18618 - Transcription profiling of human induced pluripotent stem cells signature and memory retention

Status
Submitted on 19 October 2009, released on 19 December 2009, last updated on 1 May 2014
Organism
Homo sapiens
Samples (15)
Array (1)
Protocols (6)
Description
Transient expression of two factors, or from Oct4 alone, resulted in efficient generation of human iPSCs. The reprogramming strategy described revealed a potential transcriptional signature for human iPSCs yet retaining the gene expression of donor cells in human reprogrammed cells free of viral and transgene interference. Genetic reprogramming of somatic cells to a pluripotent state (induced pluripotent stem cells or iPSCs) by over-expression of specific genes has been accomplished using mouse and human cells. However, it is still unclear how similar human iPSCs are to human Embryonic Stem Cells (hESCs). Here, we describe the transcriptional profile of human iPSCs generated without viral vectors or genomic insertions, revealing that these cells are in general similar to hESCs but with significant differences. For the generation of human iPSCs without viral vectors or genomic insertions, pluripotent factors Oct4 and Nanog were cloned in episomal vectors and transfected into human fetal neural progenitor cells. The transient expression of these two factors, or from Oct4 alone, resulted in efficient generation of human iPSCs. The reprogramming strategy described here revealed a potential transcriptional signature for human iPSCs yet retaining the gene expression of donor cells in human reprogrammed cells free of viral and transgene interference. Moreover, the episomal reprogramming strategy represents a safe way to generate human iPSCs for clinical purposes and basic research. Experiment Overall Design: Gene expression profiles measured using human genome Affymetrix Gene Chip arrays were grouped by hierarchical clustering, and correlation coefficients were computed for all pair-wise comparisons
Experiment types
transcription profiling by array, unknown experiment type
Contact
Citation
Transcriptional signature and memory retention of human-induced pluripotent stem cells. Maria C N Marchetto, Gene W Yeo, Osamu Kainohana, Martin Marsala, Fred H Gage, Alysson R Muotri.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-18618.idf.txt
Sample and data relationshipE-GEOD-18618.sdrf.txt
Raw data (1)E-GEOD-18618.raw.1.zip
Processed data (1)E-GEOD-18618.processed.1.zip
Array designA-AFFY-44.adf.txt
R ExpressionSetE-GEOD-18618.eSet.r
Links