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E-GEOD-18437 - Differentially expressed human and viral miRNAs across a panel of B-cell lines, including primary effusion lymphomas

Released on 5 December 2015, last updated on 12 December 2015
Homo sapiens
Samples (25)
Array (1)
Protocols (5)
To identify differentially expressed human and viral miRNAs across a panel of B-cell lines, including several primary effusion lymphomas (PEL). Gammaherpesvirus and host cell microRNAs (miRNAs) together modulate gene expression in normal and malignant cells. Using microRNA microarrays, we determined the expression of mature viral and host cellular miRNAs in a series of B cell tumours that include Kaposi’s Sarcoma-associated herpesvirus (KSHV) infected Primary Effusion Lymphoma (PEL) and Epstein-Barr virus (EBV) infected Burkitt’s lymphoma (BL) cell lines. We show that 35 host miRNAs were constitutively expressed in all the B cell lymphomas and differences in viral miRNA expression were evident between herpesvirus positive tumour types. Furthermore, we show that in PEL, miR-221 and miR-222 expression is defective due to a lack of transcript expression rather than mutation in the miRNA encoding loci. Absence of miR-221 and miR-222 resulted in the enhanced expression of the known target gene p27 (CDKN1B) and reintroduction of miR221 in PEL reduces p27 protein expression. miRNA expression profiling of a panel of 25 B-cell line samples.
Experiment type
transcription profiling by array 
Amy Buck, Dan Frampton, Eve Coulter, Paul Kellam
Investigation descriptionE-GEOD-18437.idf.txt
Sample and data relationshipE-GEOD-18437.sdrf.txt
Raw data (1)
Processed data (1)
Array designA-GEOD-9081.adf.txt