E-GEOD-18049 - Widespread variation in transcript abundance within and across developmental stages of Trypanosoma brucei

Status
Submitted on 8 September 2009, released on 22 May 2010, last updated on 10 June 2011
Organism
Trypanosoma brucei TREU927
Samples (15)
Array (1)
Protocols (7)
Description
Whole genome comparison of RNA levels for both protein coding genes and structural RNAs in five different life cycle stages: in vivo slender bloodstream form, in vivo stumpy bloodstream form, cultured bloodstream form, log-phase procyclic culture form and stationary-phase procyclic culture form RNA from three independent biological replicates from five different life cycle stages were hybridized to Nimblegen arrays (Madison,WI USA) that contained 8 probes per open reading frame and 3 probes per structural RNA spotted three times per array
Experiment type
transcription profiling by tiling array 
Contacts
Dhileep Sivam, Bryan C Jensen, Charles T Kifer, Marilyn Parsons, Peter J Myler
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-18049.idf.txt
Sample and data relationshipE-GEOD-18049.sdrf.txt
Raw data (2)E-GEOD-18049.raw.1.zip, E-GEOD-18049.raw.2.zip
Processed data (1)E-GEOD-18049.processed.1.zip
Array designA-GEOD-9285.adf.txt
Links