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E-GEOD-17616 - A map of open chromatin in human pancreatic islets

Status
Released on 31 January 2010, last updated on 1 May 2014
Organism
Homo sapiens
Samples (7)
Array (1)
Protocols (8)
Description
High-throughput sequencing of genomic regions isolated using FAIRE (Formaldehyde-assisted isolation of regulatory elements) from three purified pancreatic islet samples For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Identification of nucleosome-depleted genomic regions in three human pancreatic islet samples This work was carried out in the laboratories of Jason Lieb and Jorge Ferrer, and was supported in part by a subcontract to J. Lieb from Greg Crawford's ENCODE grant.
Experiment types
ChIP-seq, ChIP-chip by tiling array 
Contacts
Kyle Jeffrie Gaulton <geo@ncbi.nlm.nih.gov>, Jason D Lieb, Jorge Ferrer, Karen L Mohlke, Kyle J Gaulton, Lorenzo Pasquali, Takao Nammo
Citation
A map of open chromatin in human pancreatic islets. Gaulton KJ, Nammo T, Pasquali L, Simon JM, Giresi PG, Fogarty MP, Panhuis TM, Mieczkowski P, Secchi A, Bosco D, Berney T, Montanya E, Mohlke KL, Lieb JD, Ferrer J. , PMID:20118932
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
MIAME
PlatformsProtocolsVariablesProcessedRaw
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