E-GEOD-14243 - Transcription profiling of mouse As4.1 cells during treatment with interleukin (IL) or hydrogen peroxide (HP)

Status
Submitted on 30 December 2008, released on 11 May 2009, last updated on 10 June 2011
Organism
Mus musculus
Samples (6)
Array (1)
Protocols (6)
Description
As4.1 cells are a renin-expressing cell line commonly used to study the molecular regulation of the mouse renin gene. In the present study, the global gene expression profile was assessed in these cells under control conditions (VEHICLE) and after treatment with interleukin (IL) or hydrogen peroxide (HP), both of which negatively regulate mouse renin gene expression. Experiment Overall Design: For each experimental group, 2 separate cultures of As4.1 cells were used. Cells were treated with interleukin (IL), hydrogen peroxide (HP) or vehicle control (VEHICLE). Cellular RNA was prepared using conventional methods and quality was assessed using the Bioanalyzer 2100 (Agilent Technologies). All the microarray procedures were conducted at the University of Iowa DNA Core facility using standard Affymetrix protocols. In brief, approximately 5 ug of total RNA was used as input to a one-step amplification procedure to generate biotin-labeled RNA fragments for hybridization to the Affymetrix GeneChip Mouse Genome 430 2.0 array.
Experiment types
transcription profiling by array, unknown experiment type
Contact
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-14243.idf.txt
Sample and data relationshipE-GEOD-14243.sdrf.txt
Raw data (1)E-GEOD-14243.raw.1.zip
Processed data (1)E-GEOD-14243.processed.1.zip
Array designA-AFFY-45.adf.txt
R ExpressionSetE-GEOD-14243.eSet.r
Links