E-GEOD-1407 - Transcription profiling of human SupT1, PBMC or IMR90 cells infected with an HIV-based vector

Status
Submitted on 14 May 2004, released on 4 August 2007, last updated on 4 May 2014
Organism
Homo sapiens
Samples (7)
Array (1)
Protocols (2)
Description
SupT1, PBMC, or IMR90 cells were infected with an HIV-based vector (see Schroder et al., Cell 110:521-9) and the RNA isolated 48 hours after infection. ***PLEASE NOTE***; Series entries GSE1408 & GSE1409 no longer exist. All data discussed in the author's PLoS publication (PubMed ID 15314653) is available under GSE1407 & GSE1410. ***PLEASE NOTE***
Experiment types
transcription profiling by array, cell type comparison, co-expression, genetic modification
Contact
Citation
Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences. Rick S Mitchell, Brett F Beitzel, Astrid R W Schroder, Paul Shinn, Huaming Chen, Charles C Berry, Joseph R Ecker, Frederic D Bushman. PLoS Biol 2(8):E234 (2004)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-1407.idf.txt
Sample and data relationshipE-GEOD-1407.sdrf.txt
Raw data (1)E-GEOD-1407.raw.1.zip
Processed data (1)E-GEOD-1407.processed.1.zip
Array designA-AFFY-1.adf.txt
R ExpressionSetE-GEOD-1407.eSet.r
Links