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E-GEOD-13597 - Transcription profiling of human biopsies of Nasopharyngeal carcinoma (NPC) and non-malignant controls

Status
Submitted on 13 November 2008, released on 10 November 2009, last updated on 1 May 2014
Organism
Homo sapiens
Samples (28)
Array (1)
Protocols (4)
Description
Nasopharyngeal carcinoma (NPC) is a common cancer in southern China and South East Asia where more than 50,000 new cases are diagnosed each year. We used microarrays to identify down or upregulated genes in NPC compared with non-malignant controls. Experiment Overall Design: Snap frozen nasopharyngeal biopsies from 25 patients with histologically confirmed undifferentiated NPC were included in the microarray analysis. Controls were obtained from 3 patients with no evidence of malignancy.
Experiment types
transcription profiling by array, unknown experiment type
Contact
Citation
The ATM tumour suppressor gene is down-regulated in EBV-associated nasopharyngeal carcinoma. Shikha Bose, Lee-Fah Yap, Matthew Fung, Jane Starzcynski, Amyza Saleh, Susan Morgan, Christopher Dawson, Marilyn B Chukwuma, Esther Maina, Maike Buettner, Wenbin Wei, John Arrand, Paul V H Lim, Lawrence S Young, Soo Hwang Teo, Tatjana Stankovic, Ciaran B J Woodman, Paul G Murray.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-13597.idf.txt
Sample and data relationshipE-GEOD-13597.sdrf.txt
Raw data (1)E-GEOD-13597.raw.1.zip
Processed data (1)E-GEOD-13597.processed.1.zip
Array designA-AFFY-33.adf.txt
R ExpressionSetE-GEOD-13597.eSet.r
Links