E-GEOD-10968 - Transcription profiling by RNA-seq of Arabidopsis unopened buds from mutants defective in DNA methyltransferase or demethylase activity

Status
Released on 20 April 2008, last updated on 1 May 2014
Organism
Arabidopsis thaliana
Samples (4)
Protocols (4)
Description
Part of a set of highly integrated epigenome maps for Arabidopsis thaliana. Keywords: Illumina high-throughput transcriptome sequencing Transcriptome sequencing of wildtype Arabidopsis plants (Columbia-0), and met1, drm1 drm2 cmt3, and ros1 dml2 dml3 null mutants using the Illumina Genetic Analyzer.
Experiment types
RNA-seq of coding RNA, genetic modification design
Contacts
Joseph R Ecker <ecker@salk.edu>, A H Millar, Brian D Gregory, Charles C Berry, Julian Tonti-Filippini, Ronan C O'Malley, Ryan Lister
Citation
Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR. , Europe PMC 18423832
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Links