E-GEOD-10046 - Transcription profiling of human MCF10A cells co-cultured with breast fibroblasts from breast cancer tissues or normal breast tissues

Status
Submitted on 31 December 2007, released on 13 January 2009, last updated on 10 June 2011
Organism
Homo sapiens
Samples (6)
Array (1)
Protocols (3)
Description
The epigenetic influence from microenvironment on mammary epethelial cells was investigated by coculture MCF10A cells with different breast fibroblasts that extracted from either breast cancer tissues or normal breast tissues. Experiment Overall Design: MCF10A cells were cocultured with different breast fibroblasts that extracted from either breast cancer tissues or normal breast tissues. After three weeks coculture, MCF10A cells were sorted and harvested for total RNA extraction. Affymetrix expression microarray was performed to analyse gene expression changes.
Experiment types
transcription profiling by array, unknown experiment type
Contact
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-10046.idf.txt
Sample and data relationshipE-GEOD-10046.sdrf.txt
Raw data (1)E-GEOD-10046.raw.1.zip
Processed data (1)E-GEOD-10046.processed.1.zip
Experiment designE-GEOD-10046.biosamples.png, E-GEOD-10046.biosamples.svg
Array designA-AFFY-44.adf.txt
R ExpressionSetE-GEOD-10046.eSet.r
Links