E-ERAD-128 - RNA-Seq of human samples within Chordoma Sequencing Project. EGA study

Released on 25 June 2014, last updated on 1 July 2014
Homo sapiens
Samples (8)
Protocols (2)
This is a continuation of the Chordoma Sequencing Project. All cancers arise due to somatically acquired abnormalities in DNA sequence. Systematic sequencing of cancer genomes allows acquisition of complete catalogues of all classes of somatic mutation present in cancer. These mutation catalogues will allow identification of the somatically mutated cancer genes that are operative and characterise patterns of somatic mutation that may reflect previous exogenous and endogenous mutagenic exposures. In this application, we aim to perform whole genome sequencing on 10 chordoma matched genome pairs. RNA Sequencing/Methylation and SNP6 and an additional sequencing of three cancer cell lines will be added to this work.
Experiment type
RNA-seq of coding RNA 
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-ERAD-128.idf.txt
Sample and data relationshipE-ERAD-128.sdrf.txt