E-ATMX-21 - Transcription profiling of Arabidopsis cell cultures after Actinomycin D (transcriptional inhibitor) treatment to investigate global mRNA decay

Status
Released on 23 October 2007, last updated on 31 July 2014
Organism
Arabidopsis thaliana
Samples (18)
Array (1)
Protocols (8)
Description
Microarray analysis was carried out on samples removed from each of the Arabidopsis cell cultures prior to Actinomycin D (transcriptional inhibitor) treatment (0 h) and 1, 3, 6, 12 and 24 hours after Actinomycin D treatment using the Affymetrix GeneChip Arabidopsis ATH1 Genome Arrays (Affymterix, Santa Clara, CA).
Experiment types
transcription profiling by array, RNA stability, co-expression, compound treatment
Contact
Citation
Genome-Wide Analysis of mRNA Decay Rates and Their Determinants in Arabidopsis thaliana. Narsai, Reena; Howell, Katharine A.; Millar, A. Harvey; O Toole, Nicholas; Small, Ian; Whelan, James. , Europe PMC 18024567
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-ATMX-21.idf.txt
Sample and data relationshipE-ATMX-21.sdrf.txt
Raw data (1)E-ATMX-21.raw.1.zip
Processed data (1)E-ATMX-21.processed.1.zip
Array designA-AFFY-16.adf.txt
Links