E-ATMX-14 - Transcription profiling of Arabidopsis roots with or without treatment with 9-hydroxyoctadecatrienoic acid

Status
Released on 2 October 2009, last updated on 1 May 2014
Organism
Arabidopsis thaliana
Samples (12)
Array (1)
Protocols (8)
Description
Gene expression of roots grown on MS medium versus MS+9HOT was compared. 6-day-old seedlings grown on MS were transferred to fresh plates and grown for 3- or 5- additional days in the absence or in the presence of 9-HOT (25 um). Root fragments grown after transferring to fresh plates were excised and used to compare gene expression between controls and 9-HOT treated seedlings.
Experiment types
transcription profiling by array, co-expression, compound treatment
Contact
Citation
Oxylipins Produced by the 9-Lipoxygenase Pathway in Arabidopsis Regulate Lateral Root Development and Defense Responses through a Specific Signaling Cascade. Vellosillo, Tamara; Martinez, Marta; Lopez, Miguel Angel; Vicente, Jorge; Cascon, Tomas; Dolan, Liam; Hamberg, Mats; Castresana, Carmen. Plant Cell 19(3):831 (2007), Europe PMC 17369372
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-ATMX-14.idf.txt
Sample and data relationshipE-ATMX-14.sdrf.txt
Raw data (1)E-ATMX-14.raw.1.zip
Processed data (1)E-ATMX-14.processed.1.zip
Experiment designE-ATMX-14.biosamples.png, E-ATMX-14.biosamples.svg
Array designA-ATMX-3.adf.txt
R ExpressionSetE-ATMX-14.eSet.r
Links