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Showing 1 - 500 of 71490 experiments
AccessionTitleTypeOrganismAssaysReleasedProcessedRawViewsAtlas
ChIP-chip of primary hippocampal neurons treated with lead against non-treated controls
transcription profiling by array
Rattus norvegicus
6
Today
-
-
-
RNA-seq comparison of fetal lung and cultured fetal lung derived organoids with pluripotent stem cell derived lung organoids
RNA-seq of coding RNA
Homo sapiens
31
Today
-
ENA
-
-
Transcriptomics study on the effect of alternative oxidase expression in Bcs1l mutant (S78G) mice (Mus musculus)
RNA-seq of coding RNA
Mus musculus
288
Yesterday
-
ENA
-
-
Gene expression profiling of patients from the Danish Center for Translational Breast Cancer Research program
transcription profiling by array
Homo sapiens
94
Yesterday
-
-
Single-cell transcriptional analysis reveals ILC-like cells in zebrafish
RNA-seq of coding RNA from single cells
Danio rerio
4
Yesterday
-
ENA
-
-
Single-cell transcriptional analysis reveals innate lymphoid cell (ILC)-like cells in zebrafish
RNA-seq of coding RNA from single cells
Danio rerio
1056
Yesterday
-
ENA
1
-
Transcription profiling by array to investigate susceptibility to multiple azole resistance in Candida glabrata
transcription profiling by array
[Candida] glabrata
8
Yesterday
-
-
-
RNASeq of multiple Mycoplasma species in wild-type condition including: Mycoplasma pneumoniae, Mycoplasma genitalium, Mycoplasma hyopneumoniae, Mycoplasma capricolum, Mycoplasma gallisepticum, Mycoplasma mycoides
RNA-seq of coding RNA
Mycoplasma capricolum subsp. capricolum ATCC 27343, Mycoplasma gallisepticum str. R(high), Mycoplasma genitalium G37, Mycoplasma hyopneumoniae 168, Mycoplasma mycoides subsp. capri LC str. 95010, Mycoplasma pneumoniae M129
11
Yesterday
-
ENA
-
-
The yeast GG-NER complex evicts histone H2A.Z-containing barrier nucleosomes from CID boundaries during DNA repair
ChIP-seq
Saccharomyces cerevisiae
24
15/11/2018
-
ENA
-
-
Single-cell phenotyping and RNA sequencing reveal novel patterns of gene expression heterogeneity and regulation during growth and stress adaptation in a unicellular eukaryote
RNA-seq of coding RNA from single cells
Schizosaccharomyces pombe
2806
14/11/2018
-
ENA
-
-
The effect of micronutrient supplementation on growth and hepatic metabolism in diploid and triploid Atlantic salmon (Salmo salar) parr fed a low marine ingredient diet
transcription profiling by array
Salmo salar
36
14/11/2018
-
4
-
RNA-seq of adipose tissue from pigs divergent in feed efficiency reveals variations in adipose growth, extracellular matrix formation, lipid metabolism and immune response
RNA-seq of coding RNA
Sus scrofa
20
14/11/2018
-
ENA
-
-
MDA-MB-231/1833 bone-metastatic breast cancer cell gene expression after conditioning in conditioned medium from HUVECs conditioned in conditioned medium from static and flow-stimulated MLO-Y4 osteocytes
RNA-seq of coding RNA
Homo sapiens
8
13/11/2018
ENA
9
-
RNA-seq study on time of day specific Glucocorticoid action in mouse liver and lung tissues
RNA-seq of coding RNA
Mus musculus
32
13/11/2018
-
ENA
9
-
RNASeq data analysis of wild type and reverb alpha knockout cells from mouse liver, at different time points, with or without DEX treatment
RNA-seq of coding RNA
Mus musculus
40
13/11/2018
-
ENA
9
-
Histone H3K27ac ChIP-seq binding regions in mouse liver
ChIP-seq
Mus musculus
16
13/11/2018
ENA
12
-
ZEB1 ChIP-seq Data from Control CD8+cDC1
ChIP-seq
Mus musculus
1
13/11/2018
-
ENA
8
-
RNA-seq from ZEB1 Knockdown and Control CD8+cDC1
RNA-seq of coding RNA
Mus musculus
12
13/11/2018
-
ENA
8
-
RNA-seq of human fibroblast cell cultures treated with resveratrol against DMSO treated controls, with and without siRNA treatment targeting SIRT1
RNA-seq of coding RNA
Homo sapiens
8
12/11/2018
ENA
16
-
Selenite treatment of a Candida albicans wild type strain
transcription profiling by array
Candida albicans
32
12/11/2018
-
11
-
Selenite treatment of a Debaryomyces hansenii wild type strain
transcription profiling by array
Debaryomyces hansenii
32
12/11/2018
-
11
-
Selenite treatment of a Kluyveromyces lactis wild type strain
transcription profiling by array
Kluyveromyces lactis
32
12/11/2018
-
11
-
Selenite treatment of a Lachancea kluyveri wild type strain
transcription profiling by array
Lachancea kluyveri
32
12/11/2018
-
11
-
Selenite treatment of a Lachancea thermotolerans wild type strain
transcription profiling by array
Lachancea thermotolerans
32
12/11/2018
-
9
-
Selenite treatment of a Yarrowia lipolytica wild type strain
transcription profiling by array
Yarrowia lipolytica
32
12/11/2018
-
9
-
Transcriptome analyses of the response of C. glabrata wild type cells to iron excess, salt excess, cadmium treatment and iron starvation
transcription profiling by array
[Candida] glabrata
16
12/11/2018
-
8
-
Transcriptome analyses of a C. glabrata strain deleted for the transcription factor Aft2
transcription profiling by array
[Candida] glabrata
8
12/11/2018
-
11
-
Selenite treatment of a Candida glabrata wild type strain
transcription profiling by array
[Candida] glabrata
32
12/11/2018
-
9
-
Selenite treatment of a Saccharomyces cerevisiae wild type strain
transcription profiling by array
Saccharomyces cerevisiae
32
12/11/2018
-
9
-
RNA-seq of wild type Mycobacterium smegmatis mc2 155 (exponential and stationary phase) and Ms1 deletion strain (exponential and stationary phase)
RNA-seq of coding RNA
Mycolicibacterium smegmatis
12
12/11/2018
-
ENA
16
-
Single cell RNA-seq of mouse skin cells
RNA-seq of coding RNA from single cells
Mus musculus
2
11/11/2018
-
ENA
23
-
High content imaging in the screening of biomaterial-induced MSC behavior
transcription profiling by array
Homo sapiens
12
10/11/2018
13
-
Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae
RNA-seq of coding RNA
Saccharomyces cerevisiae
12
10/11/2018
-
ENA
14
-
Salicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants
RNA-seq of coding RNA
Arabidopsis thaliana
11
09/11/2018
-
ENA
18
-
ChIP-Seq of H3K4me3 in primary unstimulated monocyte subsets from 2 healthy donors buffy coats
ChIP-seq
Homo sapiens
12
09/11/2018
-
ENA
22
-
RNA-seq of primary human monocytes (4 healthy donors)
RNA-seq of coding RNA
Homo sapiens
8
09/11/2018
-
ENA
20
-
ChiP-seq of H3K4me3 in primary unstimulated monocytes from 3 healthy donors buffy coats and from 4 CMML patients
ChIP-seq
Homo sapiens
14
09/11/2018
ENA
22
-
Serum microRNA profiles from the Malmö Diet and Cancer Study - Cardiovascular Cohort
transcription profiling by RT-PCR
Homo sapiens
12
08/11/2018
-
20
-
Gain of chromatin loops marks the exit from naïve pluripotency – in-situ Hi-C data
Hi-C
Mus musculus
16
08/11/2018
-
ENA
25
-
Gain of chromatin loops marks the exit from naive pluripotency - ChIP seq for CTCF and Rad21
ChIP-seq
Mus musculus
12
08/11/2018
-
ENA
51
-
TCC in pluripotent and differentiated cells
DNA-seq
Mus musculus
38
08/11/2018
-
ENA
36
-
RNA-seq of Mus musculus beta cells to determine the role of the miR-200–Zeb1 axis in beta cell tumor development
RNA-seq of coding RNA
Mus musculus
22
07/11/2018
-
ENA
35
-
Transcription profiling of IGR-CaP1 prostate cancer cells resistant to docetaxel compared to non-resistant cells
transcription profiling by array
Homo sapiens
24
07/11/2018
-
25
-
Single-cell analysis of T-cells from mouse neonate thymuses in a wild type control and a placental specific isoform of Igf2 knock-down (igf2-P0)
RNA-seq of coding RNA from single cells
Mus musculus
7
06/11/2018
-
ENA
30
-
Expression profiling of 3 and 24 months mouse skeletal muscle (RNA-seq)
RNA-seq of coding RNA
Mus musculus
2
03/11/2018
-
ENA
40
-
RNA-seq of human ovarian cancer cell line OVSAHO parental and CB-5083-resistant cells
RNA-seq of coding RNA
Homo sapiens
12
02/11/2018
-
ENA
66
-
RNA-seq of TCF/LEF or beta-cetenin knockout HEK293T cells to study TCF/LEF dependent and independent regulation of Wnt/beta-catenin transcription
RNA-seq of coding RNA
Homo sapiens
18
02/11/2018
-
ENA
33
-
Herbal formula YYJD induces lung cancer cell apoptosis via activation of EGR1 (RNA-seq)
RNA-seq of coding RNA
Homo sapiens
3
01/11/2018
-
ENA
58
-
Herbal formula YYJD induces lung cancer cell apoptosis via activation of EGR1
ChIP-seq
Homo sapiens
2
01/11/2018
-
ENA
64
-
Single-cell RNA sequencing of marmoset embryonic development
RNA-seq of coding RNA
Callithrix jacchus
196
01/11/2018
-
ENA
59
-
Microarray gene expression analysis of human melanoma A375 cells treated with 0.5mM phenformin against untreated control
transcription profiling by array
Homo sapiens
4
01/11/2018
-
49
-
Microarray gene expression analysis of human melanoma A375 cells resistant to 0.5mM phenformin against sensitive naive cells
transcription profiling by array
Homo sapiens
4
01/11/2018
-
47
-
RNA-Seq of control, RNPS1 knockdown and rescue in HeLa cells
RNA-seq of coding RNA
Homo sapiens
12
01/11/2018
-
ENA
60
-
Investigation of placental DNA methylation in obese women exposed to Metformin during pregnancy
methylation profiling by array
Homo sapiens
213
01/11/2018
-
33
-
Investigation of placental gene expression in obese women exposed to Metformin during pregnancy
transcription profiling by array
Homo sapiens
108
01/11/2018
-
32
-
RNA-seq of response to heat stress and lipopolysaccharide in the thymic transcriptome of chicken broiler and fayoumi lines
RNA-seq of coding RNA
Gallus gallus
31
01/11/2018
-
ENA
48
-
Combined transcriptome analysis and polysome profiling of Streptomyces coelicolor MT1110 in SMMS
transcription profiling by array
Streptomyces coelicolor A3(2)
29
01/11/2018
-
31
-
Transcription profiling under heat stress of transgenic Arabidopsis lines in which expression of BPMs were suppressed by an amiRNA
transcription profiling by array
Arabidopsis thaliana
4
01/11/2018
-
30
-
Transcription profiling by array of mesometrial poles of implantation chamber from gestation day 10.5 beta-2-microglobulin knockout mice and wild-type controls
transcription profiling by array
Mus musculus
6
01/11/2018
36
-
Fine control of nuclear confinement identifies a threshold deformation leading to lamina rupture and induction of specific genes
transcription profiling by array
Homo sapiens
4
31/10/2018
38
-
Surface topography guides morphology and spatial patterning of induced pluripotent stem cell colonies
transcription profiling by array
Homo sapiens
12
31/10/2018
28
-
Generation of progesterone-responsive endometrial fibroblasts from human induced pluripotent stem cells: role of the WNT/CTNNB1 pathway
RNA-seq of coding RNA
Homo sapiens
27
31/10/2018
ENA
44
-
Identification of Elg1 interaction partners and effects on post-replication chromatin re-formation
MNase-seq, ChIP-seq
Saccharomyces cerevisiae
38
31/10/2018
-
ENA
28
-
Gene expression profiling of human germ cell cancer
transcription profiling by array
Homo sapiens
34
31/10/2018
-
42
-
Microarray of laser capture microdissected Paneth cells from Atg16l1 T300A and wildtype littermates mice that were either exposed or not with mainstream cigarette smoking for 6 weeks
transcription profiling by array
Mus musculus
32
31/10/2018
-
22
-
16S rRNA sequencing of fecal samples from Atg16l1 T300A and wildtype littermate mice that were exposed to mainstream cigarette smoking co-housed with mice from the same genotype but not exposed to cigarette smoking
DNA-seq
mouse gut metagenome
39
31/10/2018
ENA
32
-
16S rRNA sequencing of fecal samples from Atg16l1 T300A and wildtype littermate mice that were either exposed or not to mainstream cigarette smoking for 6 weeks
DNA-seq
mouse gut metagenome
29
31/10/2018
ENA
27
-
RNA-seq of full thickness small intestine from Atg16l1 T300A and wildtype littermate mice that were either exposed or not with mainstream cigarette smoking for 6 weeks
RNA-seq of coding RNA
Mus musculus
15
31/10/2018
ENA
34
-
Microarray comparison of NK cell from healthy donors and day 14 post stem cell transplantation
transcription profiling by array
Homo sapiens
9
31/10/2018
-
28
-
Transcriptional changes in murine keratinocyte harbouring heterozygous or homozygous R245W p53 mutation in vitro
transcription profiling by array
Mus musculus
24
31/10/2018
-
42
-
Transcription profiling by array of lymphocytes from BRCA1-mutation carriers and controls in response to irradiation
transcription profiling by array
Homo sapiens
36
31/10/2018
-
34
-
Exome-seq of Jak2VF erythroid progenitors cells transduced with Dnmt3a-Cas9-GFP lentivirus vs. emp-Cas9-GFP controls 17 weeks post transplantation
DNA-seq
Mus musculus
8
29/10/2018
-
ENA
22
-
RNAseq analysis of IKKbeta knockdown EDC4 knockdown irradiated and untreated
RNA-seq of coding RNA
Homo sapiens
16
29/10/2018
ENA
35
-
Single-cell RNA-seq on Drisophila melanogaster wild type third instar eye discs
RNA-seq of coding RNA from single cells
Drosophila melanogaster
11
29/10/2018
ENA
21
-
RNA-seq in GR18 cell line to identify genes regulated by the Glucocorticoid Receptor
RNA-seq of coding RNA
Homo sapiens
6
29/10/2018
ENA
32
-
synSTARR-seq with Glucocorticoid Receptor synthetic binding sites in GR18 cell line
RNA-seq of coding RNA
Homo sapiens
12
29/10/2018
ENA
26
-
ATAC-seq of Jak2VF LSK cells transduced with Dnmt3a-Cas9-GFP lentivirus vs. emp-Cas9-GFP controls 8 weeks post transplantation
ATAC-seq
Mus musculus
16
29/10/2018
ENA
19
-
RNA-seq of Jak2VF LSK cells transduced with Dnmt3a-Cas9-GFP lentivirus vs. emp-Cas9-GFP controls 8 weeks post transplantation
RNA-seq of coding RNA
Mus musculus
28
29/10/2018
ENA
19
-
RNA-seq of Jak2VF LSK cells transduced with Dnmt3a-Cas9-GFP lentivirus vs. emp-Cas9-GFP controls one week and five weeks post methylcellulose plating
RNA-seq of coding RNA
Mus musculus
36
29/10/2018
-
ENA
20
-
RNA-seq of total royal jelly and MRJP-3-bound RNA
RNA-seq of coding RNA
Apis mellifera
5
28/10/2018
-
ENA
22
-
Transcriptional Profiling of cultured human airway smooth cells from subjects with and without asthma
transcription profiling by array
Homo sapiens
11
27/10/2018
30
-
RNA-seq of primary mouse monocytes from miR-150 knockout and Tet3 knockout mice compared to wild type controls
RNA-seq of coding RNA
Mus musculus
22
26/10/2018
-
ENA
27
-
Genome-wide maps of nuclear lamina interactions in HeLa cells identified using MethylAdenine IDentification (MadID)
MeDIP-seq
Homo sapiens
6
26/10/2018
ENA
74
-
RNA-seq from soleus muscle of NO66-/- and NO66F/F mice
RNA-seq of coding RNA
Mus musculus
2
25/10/2018
ENA
23
-
Drop-seq analysis of bleomycin-treated and control mouse lung single-cell suspensions
RNA-seq of coding RNA from single cells
Mus musculus
10
25/10/2018
ENA
25
-
SLIC-CAGE (Super-Low Input Carrier-CAGE) application on mouse primordial germ cells isolated from embryonic day E11.5
RNA-seq of coding RNA
Mus musculus
6
25/10/2018
-
ENA
24
-
SLIC-CAGE (Super-Low Input Carrier-CAGE) development: comparison with Saccharomyces cerevisiae nAnTi-CAGE and nanoCAGE libraries and validation of SLIC-CAGE on Mus musculus total RNA
RNA-seq of coding RNA
Mus musculus, Saccharomyces cerevisiae S288C
35
25/10/2018
-
ENA
23
-
RNA-seq of human cancer cell line OVCA420* following TIGAR knockdown with shRNA
RNA-seq of coding RNA
Homo sapiens
6
24/10/2018
-
ENA
41
-
Gene expression microarray analysis of lncRNA TCAM1P-004-knockdown or RP11-598D14.1-knockdown in MIHA cells
transcription profiling by array
Homo sapiens
3
24/10/2018
-
34
-
RNA-Seq of human fetal hearts at 9, 12 and 16 weeks of gestation
RNA-seq of coding RNA
Homo sapiens
9
24/10/2018
-
ENA
33
-
CAGE on Drosophila mesodermal and whole embryo samples
RNA-seq of coding RNA
Drosophila melanogaster
6
24/10/2018
-
ENA
35
-
Total and nuclear RNA-seq of whole-embryo and mesodermal cells
RNA-seq of coding RNA
Drosophila melanogaster
11
24/10/2018
-
ENA
34
-
DNA-methylation profiling of human induced pluripotent stem cell -derived intestinal epithelial organoids
methylation profiling by array
Homo sapiens
6
23/10/2018
-
34
-
RNA-seq of mouse hypothalamus to investigate effect of high vs low fat diet
RNA-seq of coding RNA
Mus musculus
16
23/10/2018
ENA
33
-
Rpd3L HDAC links H3K4me3 to transcriptional repression memory
RNA-seq of coding RNA
Saccharomyces cerevisiae
16
23/10/2018
-
ENA
46
-
Microarray of iPSC-derived macrophages generated in a bioreactor process compared to PBMC-derived macrophages and exposed to P. aeruginosa
transcription profiling by array
Homo sapiens
8
23/10/2018
-
42
-
RNA-sequencing of human induced pluripotent stem cell-derived intestinal epithelial organoids
RNA-seq of coding RNA
Homo sapiens
4
22/10/2018
-
ENA
39
-
Regional CNS immune fingerprint in chronic peripheral inflammation
RNA-seq of coding RNA
Mus musculus
34
22/10/2018
-
ENA
38
-
mRNA-seq of HCT116 RNF40 knockdown cells upon TNF-alpha stimulation
RNA-seq of coding RNA
Homo sapiens
12
22/10/2018
ENA
45
-
DNA- and RNA-seq to study the impact of 5-formylcytosine on nucleosome organization and gene expression in embryonic mouse tissues and stem cells
MNase-seq, ChIP-seq, DNA-seq, RNA-seq of coding RNA
Mus musculus, synthetic construct
150
22/10/2018
-
ENA
35
-
RNA-seq of the human breast cancer ERα-suppressed MCF-7(MCF-7/SP10+) cells and of their internal control MCF-7 (MCF-7/C) cells
RNA-seq of coding RNA
Homo sapiens
6
22/10/2018
-
ENA
46
-
Transcription profiling of Populus x canescens developing and mature xylem under short-days and drought stress treatment
RNA-seq of coding RNA
Populus tremula x Populus alba
32
21/10/2018
-
ENA
35
-
DNA methylation of longitudinal samples from The Swedish Adoption/Twin Study of Aging (SATSA)
methylation profiling by array
Homo sapiens
2144
20/10/2018
-
56
-
Microarray analysis comparing zebrafish insulin knockout mutants to non homozygous controls
transcription profiling by array
Danio rerio
2
20/10/2018
-
47
-
Transcription profiling by array to identify Sex-Specific Transcriptome Responses to Polychlorinated Biphenyls (PCBs)
transcription profiling by array
Homo sapiens
232
20/10/2018
62
-
Whole-exome sequencing of genomic DNA extracted from patient-derived melanoma cell lines resistant to vemurafenib (PLX) or trametinib (TRA)
DNA-seq
Homo sapiens
7
20/10/2018
ENA
56
-
Transcription profiling by array of HPV16-positive OPSCC samples from human donors
transcription profiling by array
Homo sapiens
33
20/10/2018
64
-
Human primary adipose-derived stem cells (hpASC) differentiated to white adipocytes stimulated with norepinephrine 3h
RNA-seq of coding RNA
Homo sapiens
8
20/10/2018
-
ENA
43
-
Differential regulation of SGK1 by progesterone activates AP-1/NDRG1 genomic axis in PR-positive and negative breast cancer cells
transcription profiling by array
Homo sapiens
18
19/10/2018
59
-
Ribo-Seq transcriptomic analysis of human RD cells infected with enterovirus strains EV7, EV71, and PV1
RNA-seq of coding RNA
Homo sapiens
12
19/10/2018
-
ENA
73
-
ChIP-seq for H3K27ac and H3K27me3 histone marks in B lymphoblasts derived from control donors or patients with loss of function mutations in TTC7A
ChIP-seq
Homo sapiens
18
19/10/2018
-
ENA
37
-
ChIP-seq for TTC7A binding to chromatin in B lymphoblasts derived from control donors
ChIP-seq
Homo sapiens
3
19/10/2018
-
ENA
47
-
Eight in situ Hi-C experiments of mouse OG2 stem cells for 7 different starting material and that were digested by either HindIII (2 samples) or MboI (6 samples) restriction enzymes. Plus two peripheral blood mononuclear cells (PBMCs) samples obtained either from a blood extraction of a healthy donor or from a lymph node biopsy from a DLBCL patient
Hi-C
Homo sapiens, Mus musculus
16
19/10/2018
ENA
206
-
Periosteum contains skeletal stem cells with high bone regenerative potential controlled by Periostin
transcription profiling by array
Mus musculus
16
18/10/2018
-
45
-
Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics - whole genome sequencing
genotyping by high throughput sequencing
Homo sapiens
54
17/10/2018
-
ENA
55
-
Single cell sequencing of iPSC-dopamine neurons reconstructs disease progression and identifies HDAC4 as a regulator of Parkinson cell phenotypes
RNA-seq of coding RNA from single cells
Homo sapiens
568
17/10/2018
-
ENA
63
-
ChIP-seq of Pbx1, Prep1 and Sp2 in WT MEFs, Sp2ko MEFs and in Sp2ko MEFs ectopically expressing Flag-tagged full length Sp2; and ChIPexo of Sp2 in WT and Sp2ko MEFs
ChIP-seq
Mus musculus
9
17/10/2018
-
ENA
57
-
Transcription profiling of Spunta WT and SP6Aox leaves under warm temperatures
transcription profiling by array
Solanum tuberosum
12
17/10/2018
-
54
-
Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics - Smartseq 2 data
RNA-seq of coding RNA
Homo sapiens
7597
17/10/2018
ENA
70
-
Transcription profiling by array of Andigena SP5G RNAi leaves, tubers and tuber sprouts
transcription profiling by array
Solanum tuberosum
16
17/10/2018
-
39
-
mRNA expression changes in chicken livers associated with field exposure to DDTs in KwaZulu-Natal, South Africa
transcription profiling by array
Gallus gallus
2
16/10/2018
49
-
Structural and non-structural genes contribute to the genetic diversity of RNA viruses
RNA-seq of coding RNA
Yellow fever virus
16
16/10/2018
-
ENA
61
-
ChIP-seq of neuroblastoma IMR-32, CLB-GA, NGP, IMR-5/75, GI-M-EN, CHP-212, and IMR-5 cell lines to identify TBX2, MYCN, H3K27ac, H3K4me1 and H3K4me3 binding sites
ChIP-seq
Homo sapiens
66
16/10/2018
ENA
86
-
RNA-seq of estrogen (E2) induced changes of mRNA expression in Sus scrofa male and female blastocysts derived from embryonic day 10
RNA-seq of coding RNA
Sus scrofa
36
16/10/2018
ENA
46
-
RNA-seq of estrogen (E2) induced changes of mRNA expression in early pregnant Sus scrofa endometrium
RNA-seq of coding RNA
Sus scrofa
16
16/10/2018
ENA
55
-
mRNAseq of Drosophila S2 cells after knockdown of EJC components
RNA-seq of coding RNA
Drosophila melanogaster
9
15/10/2018
-
ENA
59
-
Transcriptional profiling of autophagy proficient and compromised cell lines, determined by expression levels of Atg5
transcription profiling by array
Mus musculus
6
15/10/2018
-
64
-
DNA-seq of Sus scrofa psoas major muscle tissue to investigate functional dissection of QTL-region affecting fat-deposition
DNA-seq
Sus scrofa
32
15/10/2018
ENA
221
-
PRPF8 iCLIP on HeLa cells in response to eIF4A3 Knockdown
CLIP-seq
Homo sapiens
8
14/10/2018
-
ENA
55
-
Chip-seq to identify HrdB regulated genes in Streptomyces coelicolor
ChIP-seq
Streptomyces coelicolor A3(2)
5
14/10/2018
-
ENA
54
-
Nus factors prevent premature transcription termination of bacterial CRISPR arrays
ChIP-seq
Salmonella enterica subsp. enterica serovar Typhimurium
28
13/10/2018
-
ENA
66
-
RNA-seq analysis of HeLa cells treated with GapmeR antisense oligonucleotides
RNA-seq of coding RNA
Homo sapiens
2
12/10/2018
-
ENA
52
-
Genome-wide ChIP seq analysis of Aspergillus nidulans reveals deregulation of fungal nitrogen metabolism triggered by Streptomyces rapamycinicus
ChIP-seq
Aspergillus nidulans
19
12/10/2018
ENA
55
-
RNA-seq for identifying toxin MazF and MqsR cleavage sites in toxin expression and subsequent recovery cultures of Escherichia coli (mRNA and ncRNA excluding rRNA)
RNA-seq of coding RNA
Escherichia coli K-12
10
11/10/2018
ENA
67
-
Gene expression assessed by microarrays in smoothhead sculpin, sailfin sculpin and Pacific Staghorn sculpin exposed to hypoxia over time
transcription profiling by array
Artedius lateralis, Leptocottus armatus, Nautichthys oculofasciatus
98
11/10/2018
-
50
-
A simple and robust plate-based single-cell ATAC-seq on various tissues and cell lines
ATAC-seq
Homo sapiens, Mus musculus, mixed sample
7104
10/10/2018
-
ENA
80
-
RNA-seq of muscle from pigs divergent in feed efficiency and product quality
RNA-seq of coding RNA
Sus scrofa
20
10/10/2018
-
ENA
54
-
RNA-Seq study of lipid regulation in Aphis gossypii parasitized by Lysiphlebia japonica
RNA-seq of coding RNA
Aphis gossypii
6
10/10/2018
-
ENA
47
-
RNA-Seq study of 3-days larva and pupa in Lysiphlebia japonica
RNA-seq of coding RNA
Lysiphlebia japonica
6
10/10/2018
-
ENA
58
-
Bulk RNA-Seq of whole testis sampled from juvenile mice
RNA-seq of coding RNA
Mus musculus
90
09/10/2018
ENA
58
-
Whole-genome sequencing of the 5T and 5T33 murine models for multiple myeloma
DNA-seq
Mus musculus
7
09/10/2018
-
ENA
63
-
Whole-exome sequencing of the 5T and 5T33 murine models for multiple myeloma
DNA-seq
Mus musculus
7
09/10/2018
-
ENA
43
-
RNA-seq of 5 populations from the regenerative region of the brain of young and old mice
RNA-seq of coding RNA
Mus musculus
40
08/10/2018
-
ENA
66
-
Global transcriptional response of a Bordetella bronchiseptica Bvg- phase-locked mutant (delta_bvgS) after exposure to blood
transcription profiling by array
Bordetella bronchiseptica
3
07/10/2018
48
-
Global transcriptional response of Bordetella bronchiseptica after exposure to serum
transcription profiling by array
Bordetella bronchiseptica
3
07/10/2018
39
-
Global transcriptional response of Bordetella bronchiseptica after exposure to blood
transcription profiling by array
Bordetella bronchiseptica
3
07/10/2018
46
-
Time course ChIP-seq analysis of the human GM12878 lymphoblasts upon Sendai Virus infection
ChIP-seq
Homo sapiens
10
07/10/2018
-
ENA
52
-
Time course GRO-seq analysis of the human GM12878 lymphoblasts upon Sendai Virus infection
GRO-seq
Homo sapiens
12
07/10/2018
-
ENA
52
-
Pro-osteogenic trophic effects by PKA activation in human mesenchymal stromal cells
transcription profiling by array
Homo sapiens
12
06/10/2018
54
-
A calcium-induced signaling cascade leading to osteogenic differentiation of human bone marrow-derived mesenchymal stromal cells
transcription profiling by array
Homo sapiens
6
06/10/2018
51
-
Overexpression of spliced XBP1 in in vitro Th2 cells, and comparison to 4u8c treatment
RNA-seq of coding RNA
Mus musculus
30
06/10/2018
-
ENA
39
-
The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation (ChIP-seq)
ChIP-seq
Mus musculus
8
06/10/2018
-
ENA
49
-
Single cell sequencing of 43,168 cells during the differentiation from human induced pluripotent stem cells to cardiomyocytes
RNA-seq of coding RNA from single cells
Homo sapiens
10
06/10/2018
-
60
-
Transcription profiling by array of MG-63 cells grown on different biomaterials used in bone grafts
transcription profiling by array
Homo sapiens
69
05/10/2018
50
-
RNA-seq of group 1 Innate Lymphoid Cells (ILCs) in the mouse uterus and liver
RNA-seq of coding RNA
Mus musculus
13
05/10/2018
-
ENA
36
-
Predicting the therapeutic efficacy of MSC in bone tissue engineering using the molecular marker CADM1
transcription profiling by array
Homo sapiens
72
04/10/2018
35
-
A small molecule approach to engineering vascularized tissue
transcription profiling by array
Homo sapiens
23
04/10/2018
35
-
Zygotic expression after parental early life stress
RNA-seq of coding RNA
Mus musculus
16
03/10/2018
-
ENA
50
-
4-cell embryonic expression after zygotic injection with fragmented sperm long RNA of mice exposed to early life stress
RNA-seq of coding RNA
Mus musculus
8
03/10/2018
-
ENA
48
-
Transcription profiling by array of rat microglial cells grown in C6 glioma cell conditioned media compared to untreated controls at 6, 24 and 48 hours
transcription profiling by array
Rattus norvegicus
12
03/10/2018
-
55
-
Total RNA-seq of Black6/C57 adult mouse sperm including either exposed to early life stress or control conditions
RNA-seq of coding RNA
Mus musculus
11
03/10/2018
-
ENA
42
-
H3K27ac ChIP-Seq of pancreatic islets derived from mice fed a long-term high-fat diet (HFD) against chow-fed controls
ChIP-seq
Mus musculus
2
02/10/2018
ENA
46
-
RNA-Seq of pancreatic islets derived from mice fed a long-term high-fat diet against chow-fed controls
RNA-seq of coding RNA
Mus musculus
2
02/10/2018
ENA
58
-
Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics - 10x data
RNA-seq of coding RNA
Homo sapiens
35
02/10/2018
ENA
53
-
Transcription profiling by array of palate from mouse embryos expressing activated Smoothened to study the role of Shh signalling during secondary palate development
transcription profiling by array
Mus musculus
6
02/10/2018
38
-
A Transcript and Metabolite Atlas of Blackcurrant Fruit Development Highlights Hormonal Regulation and Reveals the Role of Key Transcription Factors
transcription profiling by array
Ribes nigrum
18
01/10/2018
-
37
-
RNA-sequencing of the mRNA transcriptome in blood, across three time-points in severe psoriasis patients treated with the tumor necrosis factor (TNF) inhibitor, etanercept
RNA-seq of coding RNA
Homo sapiens
30
01/10/2018
ENA
36
-
Transcription profiling by array of pre-cancerous lesions and tumours formed by subcutaneous injection of mtDNA depleted (rho0) 4T1 cells into BALB/c mice recovered at different time points
transcription profiling by array
Mus musculus
24
01/10/2018
-
62
-
Single-cell ATAC-seq of a mixture of three oesophageal tissue (HET1A, OE33, OE19) derived cell lines
ATAC-seq
Homo sapiens
192
01/10/2018
-
ENA
54
-
Response of several cell lines originated from liver, skin and colon to stimulation by IFNg, hyper-IL6, IL27 and OSM, investigated at mRNA level
transcription profiling by array
Homo sapiens
86
01/10/2018
-
61
-
RNA-seq of Streptococcus equi strains with and without csrRS SNPs
RNA-seq of coding RNA
Streptococcus equi
33
01/10/2018
-
ENA
29
-
Mycobacterial tuberculosis infection in hypoxia-inducible factor-1alpha deficient macrophages
transcription profiling by array
Mus musculus
2
30/09/2018
-
35
-
RNA-seq of med14-3 and uvh6-3 mutants in heat stress (37°C) and control stress (23°C), with WT controls. RNA-seq of double mutants: med14-3 or uvh6-3 combined with either ddm1-2 or mom1-2 mutants. Bisulfite-seq of WT samples subjected to control or heat stress. Bisulfite-seq of med14-3 and WT samples in control stress
RNA-seq of coding RNA
Arabidopsis thaliana
22
30/09/2018
-
ENA
38
-
RNA-seq analysis of Coprinopsis cinerea mycelium challenged with gram negative and gram positive bacteria
RNA-seq of coding RNA
Coprinopsis cinerea
9
30/09/2018
ENA
35
-
BRAFV600E FRO cells treated with BRAF inhibitor (vemurafenib) for 4, 15, 24 h
transcription profiling by array
Homo sapiens
12
30/09/2018
87
-
In vivo cleavage rules and target repertoire of RNase III in Escherichia coli
RNA-seq of coding RNA, RNA-seq of non coding RNA
Escherichia coli str. K-12 substr. MG1655
37
30/09/2018
-
ENA
37
-
Single-cell RNA-seq of mouse embryonic stem cells to study the genomic encoding of transcriptional burst kinetics
RNA-seq of coding RNA from single cells
Mus musculus
609
30/09/2018
ENA
48
-
Transcription profiling by array to investigate effect of repeated cigarette exposure on three-dimensional human bronchial epithelial cultures
transcription profiling by array
Homo sapiens
12
30/09/2018
-
61
-
RNA-Seq of neuroblastoma Th-MYCN mouse model, samples sensitive to chemotherapy, and those with chemotherapy resistance
RNA-seq of coding RNA
Mus musculus
9
30/09/2018
-
ENA
56
-
Transcription profiling by array of Anopheles gambiae: Tiassale following Met knockdown by RNA interference
transcription profiling by array
Anopheles gambiae
5
30/09/2018
-
40
-
miRNA profiling of sarcoidosis Treg cells
microRNA profiling by array
Homo sapiens
27
29/09/2018
-
36
-
RNA seq experiment of Treg cells isolated from peripheral blood of patients with pulmonary sarcoidosis compared to Treg cells from peripheral blood of healthy individuals
RNA-seq of coding RNA
Homo sapiens
12
29/09/2018
-
ENA
33
-
The effect of cold and hydrogen peroxide in wheat
transcription profiling by array
Triticum aestivum
24
28/09/2018
-
61
-
High resolution SNP-Array analysis in a Chronic lymphocytic leukemia (CLL) patient
genotyping by array
Homo sapiens
1
28/09/2018
-
87
-
Whole exome sequencing and transcription profiling of a patient cohort of oral cavity squamous cell carcinomas
DNA-seq, RNA-seq of coding RNA
Homo sapiens
86
28/09/2018
-
ENA
185
-
Single-cell RNA-seq profiling of Drosphila melanogaster Rbf mutant third intsar eye discs
RNA-seq of coding RNA from single cells
Drosophila melanogaster
10
27/09/2018
ENA
47
-
Dietary cholesterol promotes fatty liver-associated liver cancer by inducing aberrant genomic expression and mutations
transcription profiling by array
Mus musculus
8
27/09/2018
-
92
-
ChIP-Seq mapping of histone modifications at multiple DNA Double Strand Breaks
ChIP-seq
Homo sapiens
51
27/09/2018
-
ENA
46
-
Investigation of titanium coated imprinted polystyrene surfaces
transcription profiling by array
Homo sapiens
24
25/09/2018
57
-
NGS data from ‘Treatment of a metabolic liver disease by in vivo genome base editing in adult mice’
genotyping by high throughput sequencing
Homo sapiens, Mus musculus
165
25/09/2018
ENA
80
-
The diurnal transcriptional landscape of the microalga Tetradesmus obliquus
RNA-seq of coding RNA
Tetradesmus obliquus
73
24/09/2018
-
ENA
56
-
RNA-sequencing of the mRNA transcriptome in lesional and non-lesional skin, across three time-points in severe psoriasis patients treated with the tumor necrosis factor (TNF) inhibitor, etanercept
RNA-seq of coding RNA
Homo sapiens
59
21/09/2018
ENA
68
-
RNA-sequencing of the small-RNA transcriptome in blood, across three time-points in severe psoriasis patients treated with the tumor necrosis factor (TNF) inhibitor, etanercept
microRNA profiling by high throughput sequencing
Homo sapiens
30
21/09/2018
-
ENA
57
-
Surface topography enhances differentiation of mesenchymal stem cells towards osteogenic and adipogenic lineages
transcription profiling by array
Homo sapiens
9
20/09/2018
60
-
RNA-seq of Chenopodium quinoa salt glands compared to whole leaves with or without salt glands
RNA-seq of coding RNA
Chenopodium quinoa
12
20/09/2018
-
ENA
62
-
Differential gene expression study in brain samples from patients suffering distinct frontotemporal lobar degeneration (FTLD) conditions
transcription profiling by array
Homo sapiens
30
19/09/2018
-
71
-
Bulk segregant analysis of 3D growth defective mutant in Physcomitrella patens (Vx501)
DNA-seq
Physcomitrella patens
4
19/09/2018
-
ENA
64
-
Cell-free serum miRNA signature of synovial sarcoma
transcription profiling by array
Homo sapiens
15
19/09/2018
91
-
RNAseq of murine brown fat, white fat and skeletal muscle
RNA-seq of coding RNA
Mus musculus
9
18/09/2018
-
ENA
87
-
Gene expression microarray of human pulmonary endothelial cells from patients with Chronic Obstructive Pulmonary Disease in comparison with normal controls
transcription profiling by array
Homo sapiens
14
18/09/2018
77
-
RNAseq of murine myoblast used as cell type control
RNA-seq of coding RNA
Mus musculus
3
16/09/2018
-
ENA
103
-
Microarray mRNA data of RPTEC/TERT1 cells exposed to nephrotoxic chemicals ochratoxin A and potassium bromate
transcription profiling by array
Homo sapiens
36
16/09/2018
-
148
-
Differential expression of E. coli(pBIC-1a) under imipenem exposure
RNA-seq of coding RNA
Escherichia coli K-12
6
15/09/2018
-
ENA
106
-
RNA-Seq of sorted and unsorted prophage-induced subpopulations in Corynebacterium glutamicum
RNA-seq of coding RNA
Corynebacterium glutamicum
44
15/09/2018
-
ENA
167
-
Quiescent endothelial cells upregulate fatty acid β-oxidation for vasculoprotection via redox homeostasis
RNA-seq of coding RNA
Mus musculus
6
12/09/2018
-
ENA
119
-
Microarray analysis of mouse cerebral cortex from brain-specific Bmal1 knockout and Per1;Per2 double mutant mice at 2 timepoints
transcription profiling by array
Mus musculus
16
11/09/2018
-
113
-
miRNA microarray of human pulmonary endothelial cells comparing patients with and without Chronic Obstructive Pulmonary Disease
transcription profiling by array
Homo sapiens
21
10/09/2018
117
-
Transcription profiling by array of mouse E15.5 FACS sorted pancreas populations based on double fluorescent reporter (Hes1GFP and Neurog3-RFP), DBA staining and Ptf1a-YFP
transcription profiling by array
Mus musculus
13
10/09/2018
-
104
-
Transcription profiling of healthy rat colonocytes and colonocytes treated with Trinitrobenzenesulfonic acid to investigate colitis
transcription profiling by array
Rattus norvegicus
1
10/09/2018
104
-
Salmonella Typhi adaptation to survival in water
RNA-seq of coding RNA
Salmonella enterica subsp. enterica serovar Typhi
12
07/09/2018
ENA
116
-
The transcriptional regulator TFB-RF1 activates transcription of a putative ABC transporter in Pyrococcus furiosus
ChIP-seq
Pyrococcus furiosus
4
07/09/2018
-
ENA
111
-
Whole-genome resequencing of Pseudomonas aeruginosa PAO1 after anti-virulence treatments targeting iron uptake
genotyping by high throughput sequencing
Pseudomonas aeruginosa
16
07/09/2018
-
ENA
89
-
A five-microRNA-signature predicting recurrence in HNSCC
microRNA profiling by array
Homo sapiens
162
06/09/2018
-
332
-
Investigation of titanium discs produced by Straumann on human mesenchymal stromal cells
transcription profiling by array
Homo sapiens
27
05/09/2018
59
-
RNA-seq of total and polysomal RNA of clk-1(qm30) mutants in Caenorhabditis elegans
RNA-seq of coding RNA
Caenorhabditis elegans
18
05/09/2018
-
ENA
229
-
Global gene expression analysis of H4T80A mutants vs WT H4 in Saccharomyces cerevisiae
RNA-seq of coding RNA
Saccharomyces cerevisiae
24
05/09/2018
ENA
108
-
Promoter Capture Hi-C of mouse ESC and TSC
Hi-C
Mus musculus
4
05/09/2018
ENA
112
-
mRNA profiling by array for pancreatic ductal adenocarcinoma for clinical application
transcription profiling by array
Homo sapiens
309
04/09/2018
267
-
mRNA-seq of human cells lines derived from Papillary thyroid carcinoma (TPC1) transfected with siRNA against BHLHE40 (DEC1) or with scramble control siRNA
RNA-seq of coding RNA
Homo sapiens
4
03/09/2018
-
ENA
155
-
RNA-seq of human melanoma cell line A375 treated with the tetracycline analogs Col-3 or doxycycline against untreated controls
RNA-seq of coding RNA
Homo sapiens
9
01/09/2018
-
ENA
162
-
A role for differential gene regulation in the rapid diversification of melanic plumage coloration in the dark-eyed junco (Junco hyemalis)
RNA-seq of coding RNA
Junco hyemalis
29
01/09/2018
-
ENA
154
-
Transcriptomic profiling of three different neuroblastoma cell lines (CLB-BAR, CLB-GE and SK-N-AS) in response to ALK inhibition
RNA-seq of coding RNA
Homo sapiens
17
01/09/2018
-
ENA
127
-
Differential Regulation of Th17 and Th1 Cells in mouse by Glutaminase-Dependent Metabolism and Chromatin Remodeling
ATAC-seq
Mus musculus
12
01/09/2018
-
ENA
97
-
RNA-seq to investigate gene expression profile associated with long-non coding RNA RAIN in TPC1 cells
RNA-seq of coding RNA
Homo sapiens
6
01/09/2018
-
ENA
84
-
RNAseq of Mucor strains cultured on potato dextrose agar (PDA)
RNA-seq of coding RNA
Mucor circinelloides, Mucor endophyticus, Mucor fuscus, Mucor lanceolatus, Mucor racemosus
5
01/09/2018
-
ENA
59
-
RNA-seq of chicken lines Broiler and Fayoumi bursal transcriptomes in response to heat stress and lipopolysaccharide
RNA-seq of coding RNA
Gallus gallus
62
01/09/2018
-
ENA
63
-
Influence of NSD3 and ESR1 knockdown on gene expression in SUM-44 cells
transcription profiling by array
Homo sapiens
9
01/09/2018
89
-
Copy Number Variation (CNV) analysis of grade III 1p/19q co-deleted glioma
comparative genomic hybridization by array
Homo sapiens
197
01/09/2018
-
179
-
Myeloid lineage switch in pro-B cells generates novel macrophage subsets during homeostasis and inflammation
transcription profiling by array
Mus musculus
30
01/09/2018
58
-
RNA-Seq of A375 cells treated with tetracycline-based crosslinking probes, with and without competition by parent tetracyclines, to show specific binding of the tetracycline analogs Col-3 and doxycycline on rRNA substructures of the human ribosome
RNA-seq of coding RNA
Homo sapiens
18
31/08/2018
-
ENA
86
-
RNA-seq of equine and canine mammary stem cells treated with DMBA
RNA-seq of coding RNA
Canis lupus familiaris, Equus caballus
12
31/08/2018
-
ENA
88
-
miR-196a is able to restore the aggressive phenotype of Annexin A1 CRISPR/Cas9 knock-out pancreatic cancer cells
microRNA profiling by high throughput sequencing
Homo sapiens
6
31/08/2018
-
ENA
78
-
Gene expression in Arabidopsis CAF-1 mutant leaves
transcription profiling by array
Arabidopsis thaliana
9
31/08/2018
-
36
-
CG200745, an HDAC inhibitor, induces anti-tumour effects in cholangiocarcinoma cell lines targeting the Hippo pathway
transcription profiling by array
Homo sapiens
16
31/08/2018
-
97
-
RNA-Seq of A375 cells treated with tetracycline-based crosslinking probes to identify binding sites for the tetracycline analogs Col-3 and doxycycline on the human ribosome
RNA-seq of coding RNA
Homo sapiens
18
30/08/2018
-
ENA
78
-
Expression profiling of K-Ras-driven lung carcinogenesis upon the genetic absence of Enpp2 from pulmonary cells
transcription profiling by array
Mus musculus
6
30/08/2018
-
70
-
Transcriptomic analysis of Responsive and Non-responsive Human NK cells to Plasmodium falciparum-infected red blood cells
transcription profiling by array
Homo sapiens
20
30/08/2018
-
49
-
Human notochordal cell transcriptome in the developing intervertebral disc
transcription profiling by array
Homo sapiens
7
29/08/2018
46
-
Phosphoglycerate dehydrogenase causes electron transport chain defect via impaired heme synthesis: RNA sequencing
RNA-seq of coding RNA
Homo sapiens
6
29/08/2018
-
ENA
55
-
RNAseq of isolated mitotic HeLa cells treated with Actinomycin D
RNA-seq of coding RNA
Homo sapiens
25
28/08/2018
ENA
123
-
RNA-seq of heart left ventricle during myocardial ischemia in TAB-1 knock-in mice compared to wild type controls
RNA-seq of coding RNA
Mus musculus
10
27/08/2018
-
ENA
92
-
Sox2 ChIP-seq in hindbrain and spinal cord neural progenitors differentiated from mouse embryonic stem cells
ChIP-seq
Mus musculus
8
27/08/2018
-
ENA
79
-
ATAC-seq on ESCs undergoing directed differentiation towards defined neural fates
ATAC-seq
Mus musculus
44
27/08/2018
-
ENA
102
-
Illumina microarray analysis of brain regions following acute exposure to bilirubin or LPS
transcription profiling by array
Mus musculus
96
26/08/2018
76
-
Illumina microarray analysis of MCF7 and SHSY5Y cells exposed to bilirubin
transcription profiling by array
Homo sapiens
12
25/08/2018
134
-
RNA-seq of total RNA from human adipose tissue stem cells induced to adipogenesis and osteogenesis for 24 hours
RNA-seq of coding RNA
Homo sapiens
36
24/08/2018
-
ENA
102
-
RNA-seq of coding RNA (polysomal and free fraction) from human adipose tissue stem cells treated with cyclopamine, purmorphamine and DMSO
RNA-seq of coding RNA
Homo sapiens
18
24/08/2018
-
ENA
61
-
RNA seq of Saccharomyces cerevisiae expressing pathways designed to increase ATP or GTP consumption
RNA-seq of coding RNA
Saccharomyces cerevisiae
209
23/08/2018
-
ENA
57
RNA-Seq of developing shoot apical meristems of barley cultivar Golden Promise (null segregant and Ubi::HvFT3 overexpressor) grown under long- and short-day photoperiods
RNA-seq of coding RNA
Hordeum vulgare subsp. vulgare
24
21/08/2018
-
ENA
63
-
Determining open chromatin profiles of a specific population of cells isolated from zebrafish embryos at 10 hours post fertilization using the ATAC-seq method
ATAC-seq
Danio rerio
4
21/08/2018
-
ENA
70
-
RNA-seq of Pseudomonas aeruginosa PAO1 wild-type and mexZ transcriptional regulator knockout mutant
RNA-seq of coding RNA
Pseudomonas aeruginosa PAO1
6
21/08/2018
-
ENA
62
-
RNA-seq of Pdx1-GFP+ sorted E10.5, wildtype and Hes1-/-. Neurog3-dependent Pancreas Dysgenesis Causes Ectopic Pancreas in Hes1 Mutants
RNA-seq of coding RNA
Mus musculus
11
20/08/2018
-
ENA
70
-
Determining single-cell mRNA expression profiles of a specific population isolated from zebrafish embryos at 10 hours post fertilization
RNA-seq of coding RNA from single cells
Danio rerio
102
20/08/2018
-
ENA
75
-
Intestinal expression in murine antibiotic-induced acceleration of Type 1 diabetes
RNA-seq of coding RNA
Mus musculus
66
19/08/2018
-
ENA
98
-
Single cell sequencing of 3 lung carcinomas
RNA-seq of coding RNA from single cells
Homo sapiens
12
18/08/2018
-
ENA
259
-
RNA-seq of IMR-5/75 neuroblastoma cell line treated with JQ1, THZ1 or combination against untreated controls
RNA-seq of coding RNA
Homo sapiens
64
17/08/2018
-
ENA
83
-
Single cell RNA-seq of WTC-CRISPRi human induced pluripotent stem cells
RNA-seq of coding RNA from single cells
Homo sapiens
5
17/08/2018
ENA
203
-
RNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout
RNA-seq of coding RNA
Arabidopsis thaliana
6
16/08/2018
-
ENA
80
-
Genome-wide analysis reveals that budding yeast Rif1 binds to replication origins and at blocked replication forks to protect nascent DNA
ChIP-seq
Saccharomyces cerevisiae
16
16/08/2018
-
ENA
74
-
RNA-seq of IMR-5/75 neuroblastoma cell line upon TBX2 and/or MYCN knockdown
RNA-seq of coding RNA
Homo sapiens
144
16/08/2018
-
ENA
85
-
RNA-seq of CLB-GA neuroblastoma cell line upon TBX2 knockdown
RNA-seq of coding RNA
Homo sapiens
36
16/08/2018
-
ENA
65
-
ATAC-seq in neuroblastoma IMR-32 cell line
RNA-seq of coding RNA
Homo sapiens
4
16/08/2018
-
ENA
64
-
RNA-seq of cold-induced transcriptome changes in skeletal muscle of beta-adrenergic receptor knockout mice
RNA-seq of coding RNA
Mus musculus
16
16/08/2018
-
ENA
118
RNA-seq of cold-induced transcriptome changes in subcutaneous adipose tissue of beta-adrenergic receptor knockout mice
RNA-seq of coding RNA
Mus musculus
16
16/08/2018
-
ENA
45
RNA-seq of GFP+ (Myod-lineage) progenitor cells versus Tomato+ progenitor cells from inguinal WAT of Myod-driven mTmG reporter mice
RNA-seq of coding RNA
Mus musculus
2
15/08/2018
-
ENA
59
-
Myod-lineage beige adipose tissue identification
RNA-seq of coding RNA
Mus musculus
6
15/08/2018
-
ENA
57
-
RNA-Seq of T cells sorted from human PBMCs, or from T cells stimulated with CD3/CD28 beads for 4 days, or from the spleen of NSG or NSG-HLA-A2/HHD mice, 7 days after transplantation with human PBMCs
RNA-seq of coding RNA
Homo sapiens
68
14/08/2018
-
ENA
69
-
Whole exome sequencing analyses of human, IDH2-mutated, acute myeloid leukemia samples from patients before or during treatment with Enasidenib
DNA-seq
Homo sapiens
47
13/08/2018
-
ENA
108
-
ChIP-seq of tumour associated macrophages derived from high grade ovarian serous carcinoma patient ascites
ChIP-seq
Homo sapiens
9
13/08/2018
-
ENA
103
-
Bioinformatics-based selection of a model cell type for in vitro biomaterial testing
transcription profiling by array
Homo sapiens
54
12/08/2018
152
-
9-(S)-HODE treatment of Drosophila S2 cells
transcription profiling by array
Drosophila melanogaster
4
12/08/2018
-
53
-
Microarray analysis for leaves of Arabidopsis thaliana Col-0 plants fumigated with nitrogen dioxide (treatment) or air (control)
transcription profiling by array
Arabidopsis thaliana
16
10/08/2018
59
-
In vitro systems toxicology-based assessment of the potential modified risk tobacco product CHTP1.2 for vascular inflammation- and cytotoxicity-associated mechanisms promoting adhesion of monocytic cells to human coronary arterial endothelial cells
transcription profiling by array
Homo sapiens
104
09/08/2018
46
-
RNA-seq of human ASCs expanded with 10% FBS and in FBS-deprived condition
RNA-seq of coding RNA
Homo sapiens
10
09/08/2018
ENA
56
-
miRNA-seq of human ASCs expanded with 10% FBS and in FBS-deprived condition
microRNA profiling by high throughput sequencing
Homo sapiens
10
09/08/2018
ENA
45
-
RNA sequencing of human, IDH2-mutated, acute myeloid leukemia samples from patients before or during treatment with Enasidenib
RNA-seq of coding RNA
Homo sapiens
4
08/08/2018
-
ENA
80
-
RNA-seq of rat microglia, mouse neurons and human astrocytes in co-culture, both in control conditions and challenged with LPS
RNA-seq of coding RNA
mixed sample
36
08/08/2018
-
ENA
51
-
Effect of MHC II expression in pro-B cells: Pre-B cells and follicular B cells from wild-type and MHC II conditional mice
RNA-seq of coding RNA
Mus musculus
16
07/08/2018
-
ENA
63
Effect of MHC II expression in pro-B cells: F6 leukaemic cell line
RNA-seq of coding RNA
Mus musculus
6
07/08/2018
-
ENA
99
-
Identification of Angustifolia 3 (ZmAN3) target genes through GSyellow-based ChIP-seq in Zea mays leaves
ChIP-seq
Zea mays
4
07/08/2018
-
ENA
53
-
Identification of Peopod2 (PPD2) target genes through GSyellow-based ChIP-seq in Arabidopsis thaliana PSB-D cell cultures
ChIP-seq
Arabidopsis thaliana
5
07/08/2018
-
ENA
57
-
Ribosome profiling of CLL patient samples
RNA-seq of coding RNA
Homo sapiens
14
07/08/2018
-
ENA
100
-
Next Generation Sequencing Transcriptomic Analysis (RNA-seq) of Thoroughbred horse at rest, after exercise and after training
RNA-seq of coding RNA
Equus caballus
61
07/08/2018
-
ENA
45
-
RNA-seq of one human cortex sample and one sample from the HAP1 cell line, used to illustrate the development and application of the JCC score
RNA-seq of coding RNA
Homo sapiens
2
06/08/2018
-
ENA
74
-
JAK2V617F mutant HSC microarray
transcription profiling by array
Mus musculus
9
06/08/2018
48
-
Diverse effects of cyclic AMP variants on osteogenic and adipogenic differentiation of human mesenchymal stromal cells
transcription profiling by array
Homo sapiens
18
05/08/2018
37
-
Full transcriptome analysis of MCF-7 cells treated with screening hit compounds versus control
transcription profiling by array
Homo sapiens
35
04/08/2018
-
79
-
Transcriptomic profile of human induced pluripotent stem cells at single cell resolution
RNA-seq of coding RNA from single cells
Homo sapiens
2
04/08/2018
-
34
-
RNA sequencing of CD57+ and CD57- effector memory CD8 T cells in patients with type 1 diabetes
RNA-seq of coding RNA
Homo sapiens
10
03/08/2018
-
ENA
42
-
The effects of endurance exercise and diet on atherosclerosis in young and aged ApoE-/- and WT mice
transcription profiling by array
Mus musculus
48
02/08/2018
38
-
RNAseq of Mercurialis annua control and selected lines after four generations of selection for increased male allocation in females
RNA-seq of coding RNA
Mercurialis annua
24
01/08/2018
-
ENA
41
-
Metatranscriptome of surface gravel plain soils from the hyperarid Central Namib Desert
RNA-seq of coding RNA
soil metagenome
12
01/08/2018
-
ENA
38
-
Velvet domain protein VosA represses the zinc cluster transcription factor SclB regulatory network for Aspergillus nidulans asexual development, oxidative stress response and secondary metabolism
RNA-seq of coding RNA
Aspergillus nidulans
9
31/07/2018
-
ENA
46
-
Microarray of tolerogenic dendritic cells differentiated in the presence of vitamin D3, dexamethasone or rapamycin
transcription profiling by array
Homo sapiens
25
31/07/2018
43
-
Bulk-cell RNA-seq analysis of early cutaneous wound healing in mouse
RNA-seq of coding RNA
Mus musculus
9
31/07/2018
-
ENA
41
-
TCR repertoire analysis by Next-generation sequencing of mouse CD8+ T cells in spleen or tumor
RNA-seq of coding RNA
Mus musculus
16
31/07/2018
-
ENA
35
-
Gene transcription profiling of Physcomitrella patens Pp_A_Doko#069 (DOKO69; Koprivova et al., 2004) protonema grown in liquid cultures
transcription profiling by array
Physcomitrella patens
3
31/07/2018
46
-
Whole transcriptome profiling of the steady state and Hh-treated (8 hrs) Alpk1+/- (heterozygous) and Alpk1-/- (knockout) BMDMs using RNA-Sequencing approach
RNA-seq of coding RNA
Mus musculus
12
30/07/2018
-
ENA
38
-
Transcriptome profiling of gene expression in the colon tissues of steady state and Helicobacter hepaticus-infected 129SvEvS6.Rag2−/− mice and the congenic strain 129.C3B.Rag2−/− R17
transcription profiling by array
Mus musculus
24
30/07/2018
-
77
-
Bulk RNA-sequencing of self-maintaining versus monocyte-replaced gut macrophages
RNA-seq of coding RNA
Mus musculus
62
30/07/2018
ENA
66
-
Single-cell RNA sequencing of self-maintaining lamina propria macrophages
RNA-seq of coding RNA from single cells
Mus musculus
1
30/07/2018
-
ENA
61
-
H3K14ac is linked to methylation of H3K9 by the Tudor domains of SETDB1
ChIP-seq
Mus musculus
6
30/07/2018
-
ENA
49
-
Transcriptome of the liver in 15-day-old C3H/HeJ mice
RNA-seq of coding RNA
Mus musculus
20
29/07/2018
ENA
73
-
Transcriptome profiles of C3H/HeJ mouse liver tumours
RNA-seq of coding RNA
Mus musculus
200
29/07/2018
ENA
80
-
Comparison of a resistant field population of Anopheles gambiae ss collected in Tiefora, Burkina Faso (2014) compared to a lab susceptible ss Anopheles gambiae Kisumu
transcription profiling by array
Anopheles gambiae
3
29/07/2018
-
47
-
Comparison of a resistant population of Anopheles gambiae ss, from Tiefora Burkina Faso, to a lab susceptible An. gambiae ss Kisumu
transcription profiling by array
Anopheles gambiae
4
29/07/2018
-
44
-
Comparison of a resistant field Anopheles coluzzii population from Banfora, Burkina Faso to lab susceptible N'Gousso 2014
transcription profiling by array
Anopheles gambiae
4
29/07/2018
-
47
-
Molecular profiling of Ctcf hemizygous mouse embryonic fibroblasts: HiC
Hi-C
Mus musculus
6
29/07/2018
-
ENA
48
-
Molecular profiling of Ctcf hemizygous mouse embryonic fibroblasts: ChIP-seq
ChIP-seq
Mus musculus
48
29/07/2018
ENA
66
-
Molecular profiling of Ctcf hemizygous mouse embryonic fibroblasts: RNA-seq
RNA-seq of coding RNA
Mus musculus
12
29/07/2018
ENA
58
-
RNA-seq of pooled ambystoma mexicanum tissues derived from a mix of developmental stages
RNA-seq of coding RNA
Ambystoma mexicanum
8
29/07/2018
-
ENA
42
-
APIM treatment of different cancer cell lines, short and long term
transcription profiling by array
Homo sapiens
168
29/07/2018
-
115
-
RNA-seq of hepatic biopsies taken from patients with chronic liver disease presenting with different aetiologies (HCV, FLD) and fibrosis stages
RNA-seq of coding RNA
Homo sapiens
69
28/07/2018
ENA
84
-
Microarray for duodenum epithelium of C57Bl6 PPARgVillinCRE and wild type mice submitted to 2 weeks 75% caloric restriction compared to ad libitum fed controls
transcription profiling by array
Mus musculus
12
27/07/2018
51
Single-cell RNA-seq of naive and primed human embryonic stem cells
RNA-seq of coding RNA from single cells
Homo sapiens
2687
26/07/2018
ENA
63
-
RNA-seq of mouse macrophages to investigate how interferon gene therapy reprograms the leukemia microenvironment
RNA-seq of coding RNA
Mus musculus
11
26/07/2018
-
ENA
82
-
Interferon gene therapy reprograms the leukemia microenvironment inducing protective immunity to multiple tumor antigens
RNA-seq of coding RNA from single cells
Mus musculus
5
25/07/2018
-
-
91
-
Time series experiment on L4 stage of Caenorhabditis elegans N2
transcription profiling by array
Caenorhabditis elegans
10
24/07/2018
-
48
-
HumanMethylation450 (450k) data for 79 rheumatoid arthritis disease discordant monozygotic twin pairs
methylation profiling by array
Homo sapiens
316
24/07/2018
-
39
-
Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression
microRNA profiling by high throughput sequencing
Sus scrofa
36
23/07/2018
ENA
74
-
24h time-course microarray study of SW480 and SW620 cells
transcription profiling by array
Homo sapiens
18
23/07/2018
-
79
-
Various evolutionary trajectories lead to loss of activity of tobramycin-potentiating compounds in Burkholderia cenocepacia biofilms
DNA-seq
Burkholderia cenocepacia
12
22/07/2018
-
ENA
71
-
Transcriptome analysis of HeLa cells upon deprivation of methionine and cysteine (Met/Cys)
RNA-seq of coding RNA
Homo sapiens
8
21/07/2018
-
ENA
106
-
Effect of the IRE1a-XBP1 pathway inhibition during T helper 2 differentiation
RNA-seq of coding RNA
Mus musculus
8
20/07/2018
-
ENA
43
-
Transcription profiling by array of B lymphoblasts derived from either control donors or patients with loss of function mutations in TTC7A
transcription profiling by array
Homo sapiens
10
19/07/2018
-
58
-
Klhl6 deficiency impairs transitional B cell survival and differentiation
transcription profiling by array
Mus musculus
12
17/07/2018
-
86
Single-cell RNA-seq of of human dermal fibroblasts (supplementary - different stimulation conditions of dsRNA)
RNA-seq of coding RNA from single cells
Homo sapiens
1920
16/07/2018
ENA
74
-
Single-cell RNA-seq of dermal fibroblasts (5 human individuals - IFNB stimulation)
RNA-seq of coding RNA from single cells
Homo sapiens
681
16/07/2018
ENA
81
-
Single-cell RNA-seq of of dermal fibroblasts (supplementary - human fibroblasts stimulation with dsRNA)
RNA-seq of coding RNA from single cells
Homo sapiens
590
16/07/2018
ENA
80
-
Bulk RNA-seq of of human dermal fibroblasts from up to 66 individuals (supplementary)
RNA-seq of coding RNA
Homo sapiens
168
16/07/2018
ENA
88
-
Single-cell RNA-seq of of bone marrow derived mononuclear phagocytes derived from mouse; rat; rabbit or pig
RNA-seq of coding RNA from single cells
Mus musculus, Oryctolagus cuniculus, Rattus norvegicus, Sus scrofa
68
16/07/2018
ENA
98
-
Transcriptome of Trypanosome brucei after PUF2 Knock-down - polysome fractions
RNA-seq of coding RNA
Trypanosoma brucei
3
16/07/2018
-
ENA
65
-
RNA-seq of mouse EL4 cells overexpressing Israa gene product in comparison with Mock-transfected control cells
RNA-seq of coding RNA
Mus musculus
2
15/07/2018
-
ENA
85
-
Transcriptomic effects of long-term pantethine treatment in the mouse Alzheimer's disease 5XFAD model
transcription profiling by array
Mus musculus
12
15/07/2018
-
66
-
RNA-seq of human neurons derived from H9 embryonic stem cell lines treated with BDNF, TrkB agonist ZEB 85 or NT4 against untreated controls
RNA-seq of coding RNA
Homo sapiens
192
13/07/2018
ENA
106
-
RNA-seq of mouse heart that is both heart SOD2 knockout and deficient for mitochondrial DNA repair
RNA-seq of coding RNA
Mus musculus
19
13/07/2018
-
ENA
77
-
DNA-seq of mitochondrial DNA from mouse heart that is both heart SOD2 knockout and deficient for mitochondrial DNA repair
DNA-seq
Mus musculus
43
13/07/2018
-
ENA
78
-
DNA-seq of mitochondrial DNA from liver of OGG1 and MUTYH deficient mice that have been bred for five consecutive generations
DNA-seq
Mus musculus
30
13/07/2018
-
ENA
68
-
Binding of the Zika virus genome to endogenous human transcripts
RNA-seq of non coding RNA
Homo sapiens
18
13/07/2018
-
ENA
77
-
Whole-exome sequencing of genomic DNA extracted from patient-derived melanoma cell lines grown in vitro
DNA-seq
Homo sapiens
8
12/07/2018
ENA
91
-
miRNA profiling array results in serum RNA (healthy volunteers and breast tumor patients)
microRNA profiling by array
Homo sapiens
7
12/07/2018
-
91
-
Promoter capture and whole genome in situ Hi-C of human iPSC and iPSC-derived cardiomyocytes from an Yoruban individual (NA19101)
Hi-C
Homo sapiens
12
11/07/2018
ENA
89
-
Gene expression profiling by RNA-seq of human iPSC and iPSC-derived cardiomyocytes from an Yoruban individual (NA19101)
RNA-seq of coding RNA
Homo sapiens
6
11/07/2018
ENA
83
-
RNA libraries of sorted CD8+ memory T cells from the spleen and RNA libraries of sorted IELs from the small intestine of C57BL/6J mice
RNA-seq of coding RNA
Mus musculus
6
10/07/2018
-
ENA
60
-
iPSC-derived macrophages effectively treat pulmonary alveolar proteinosis in Csf2rb-deficient mice
RNA-seq of coding RNA
Mus musculus
10
10/07/2018
ENA
72
-
RNA-seq of human skin lesions diagnosed as actinic keratosis, intraepidermal carcinoma or squamous cell carcinoma
RNA-seq of coding RNA
Homo sapiens
25
09/07/2018
ENA
98
-
Massively parallel single-cell RNA-sequencing of K14E7 transgenic and wildtype C57BL/6 mice
RNA-seq of coding RNA from single cells
Mus musculus
4
09/07/2018
ENA
52
-
RNA-seq of metabolically labelled RNA by 4-thiouracil from mouse tissues
RNA-seq of coding RNA
Mus musculus
18
09/07/2018
-
ENA
46
-
Single cell sequencing of lung carcinoma
RNA-seq of coding RNA from single cells
Homo sapiens
19
09/07/2018
-
276
-
SNP array Multi-omics molecular profiling of primary prostate adenocarcinoma
genotyping by array
Homo sapiens
66
09/07/2018
-
74
-
SCRB-seq comparison with TruSeq on bulk RNA-seq human LCL (DMSO) and BAY treated LCL (BAY)
RNA-seq of coding RNA
Homo sapiens
12
07/07/2018
-
ENA
56
-
Single-cell RNA-seq of ex vivo CD45-negative skin resident-cells using microfluidic droplet capture
RNA-seq of coding RNA
Homo sapiens
8
06/07/2018
-
57
-
Bulk RNA-seq of of bone marrow derived mononuclear phagocytes
RNA-seq of coding RNA
Mus musculus, Oryctolagus cuniculus, Rattus norvegicus, Sus scrofa
73
06/07/2018
-
ENA
67
-
Single-cell RNA-seq of dermal fibroblasts stimulated with dsRNA (poly I:C) in a time course of 0, 4 and 8 hours
RNA-seq of coding RNA from single cells
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
240
06/07/2018
ENA
72
-
Single-cell RNA-seq of of dermal fibroblasts using microfluidic droplet capture (stimulated cells)
RNA-seq of coding RNA from single cells
Homo sapiens
2130
06/07/2018
ENA
66
-
Single-cell RNA-seq of of dermal fibroblasts using microfluidic droplet capture (unstimulated cells)
RNA-seq of coding RNA from single cells
Homo sapiens
2553
06/07/2018
ENA
61
-
Single-cell RNA-seq of dermal fibroblasts stimulated with dsRNA (poly I:C) in a time course of 0, 2, 4 and 8 hours
RNA-seq of coding RNA from single cells
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
728
06/07/2018
ENA
62
-
Bulk RNA-seq of dermal fibroblasts after stimulation with interferon or dsRNA (poly I:C)
RNA-seq of coding RNA
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
79
06/07/2018
ENA
56
-
ChIP-seq of H3K4me3 and H3K27ac of dermal fibroblasts with and without dsRNA (poly I:C) stimulation
ChIP-seq
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
52
06/07/2018
ENA
59
-
The effect of high cholesterol diet on expression level of myocardial microRNAs
microRNA profiling by array
Rattus norvegicus
6
06/07/2018
-
46
-
ChIP-Seq of BCL11A and SOX2 in lung squamous cell carcinoma (LUSC) LK-2 cell line with or without BCL11A knockdown
ChIP-seq
Homo sapiens
5
05/07/2018
ENA
89
-
The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice
transcription profiling by array
Mus musculus
12
05/07/2018
-
48
-
RNA-seq experiment of isolated endothelial and microglial cells from hippocampal DG and CA1 regions under control and VEGF overexpression conditions
RNA-seq of coding RNA
Mus musculus
16
04/07/2018
ENA
46
-
Transcriptional response to Rosiglitazone in adipocyte progenitors isolated from WT and Cited4-KO scWAT
transcription profiling by array
Mus musculus
12
04/07/2018
-
41
Transcriptomic profiling of human neuromesodermal-like cells and spinal cord progenitors derived in vitro from H9 ES cell line
RNA-seq of coding RNA
Homo sapiens
6
04/07/2018
ENA
53
-
RNA-seq of primary human M2-polarized macrophages cultured in either high-concentration or low-concentration type I collagen
RNA-seq of coding RNA
Homo sapiens
6
04/07/2018
ENA
60
-
RNAseq of the human gut commensal Bacteroides thetaiotaomicron wildtype, bt0700 and bt0700 bt3998 (ppGpp0) strains across three conditions: glucose minimal medium, 1h of carbon starvation, and mouse gut colonization
RNA-seq of coding RNA
Bacteroides thetaiotaomicron VPI-5482
29
04/07/2018
ENA
49
-
RNA-seq analysis of anti-malarial drug chemotherapy of murine experimental Cerebral Malaria (ECM)
RNA-seq of coding RNA
Mus musculus
39
03/07/2018
-
ENA
51
SNP array profiling of leiomyosarcoma
transcription profiling by array
Homo sapiens
26
02/07/2018
-
70
-
Identification of driver genes in uterine leiomyosarcoma: whole-genome sequencing
DNA-seq
Homo sapiens
4
02/07/2018
-
73
-
Identification of driver genes in uterine leiomyosarcoma: low-coverage WGS
DNA-seq
Homo sapiens
35
02/07/2018
-
ENA
80
-
Identification of driver genes in uterine leiomyosarcoma: RNA seq
RNA-seq of coding RNA
Homo sapiens
30
02/07/2018
-
ENA
72
RNA-seq of Fusarium graminearum under predation by the springtail Folsomia candida against untreated controls
RNA-seq of coding RNA
Fusarium graminearum
8
01/07/2018
-
ENA
47
-
RNA-seq of Streptococcus pyogenes biofilms
RNA-seq of coding RNA
Streptococcus pyogenes
18
01/07/2018
-
ENA
44
-
RNAseq of human bone marrow mesenchymal stem cells in co-culture with endothelial cells
RNA-seq of coding RNA
Homo sapiens
6
01/07/2018
-
ENA
52
-
Meiotic crossover landscape within the RAC1 disease resistance gene
DNA-seq
Arabidopsis thaliana
10
01/07/2018
-
ENA
43
-
Whole-genome shallow-sequencing of HPV-positive and HPV-negative vulvar lesions
DNA-seq
Homo sapiens
86
01/07/2018
ENA
52
-
Transcription profiling of irradiated non-adherent anoikis-resistant DU145 and MCF-7 cells and 5-azacytidine-treated non-adherent anoikis-resistant HeLa cells in contrast to control (non-irradiated, non-treated) cells
transcription profiling by array
Homo sapiens
26
01/07/2018
-
40
-
Development of a small molecule for treatment of castration resistant prostate cancer via androgen receptor and IL6/STAT3 pathways
transcription profiling by array
Homo sapiens
12
01/07/2018
-
55
Microarray of four types of mouse immune samples including those of the spleen (SP), bone marrow (BM), lymph node (LN), and peripheral blood mononuclear cell (PBMC) and three tumor tissues including MC38, EL4 and LLC
transcription profiling by array
Mus musculus
21
30/06/2018
-
68
-
Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions
RNA-seq of coding RNA
Saccharomyces cerevisiae
8
30/06/2018
-
ENA
35
-
DNA methylation in acute sleep loss in humans
transcription profiling by array
Homo sapiens
60
30/06/2018
-
38
-
RNA-seq in acute sleep loss in humans
RNA-seq of coding RNA
Homo sapiens
60
30/06/2018
-
33
-
Transcriptional profiling of blood exposure response gene signature across clinical studies on The Tobacco Heating System 2.2 (THS 2.2) dataset 2
transcription profiling by array
Homo sapiens
378
30/06/2018
37
-
Transcriptional profiling of blood exposure response gene signature across clinical studies on The Tobacco Heating System 2.2 (THS 2.2) dataset 1
transcription profiling by array
Homo sapiens
296
30/06/2018
37
-
RNA-seq comparison of gene expression in enteroids derived of fresh or frozen human intestinal biopsies
RNA-seq of coding RNA
Homo sapiens
129
30/06/2018
-
ENA
45
RNA-seq of Staphylococcus aureus and Staphylococcus aureus challenged with squalene compared to control growth
RNA-seq of coding RNA
Staphylococcus aureus, Staphylococcus epidermidis
12
30/06/2018
ENA
34
-
CXCR3+ Treg cells suppress Th1-immune responses through expression of the co-inhibitory receptors CD85k and Lag-3
RNA-seq of coding RNA
Mus musculus
7
30/06/2018
-
ENA
33
-
Transcription profiling by array of the effect of rapamycin on Anopheles gambiae strains 2La or 2L+
transcription profiling by array
Anopheles gambiae
6
30/06/2018
-
37
-
Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing
RNA-seq of coding RNA
Aedes albopictus, Chlorocebus sabaeus
10
30/06/2018
-
ENA
42
-
ChIP-Seq (H3K4me3, H3K27me3) of steady-state splenic classical dendritic cells from wild type, germ-free and IFNAR knockout mice
ChIP-seq
Mus musculus
18
30/06/2018
-
ENA
38
-
RNA-Seq of steady-state and LPS stimulated splenic classical dendritic cells from wild type, germ-free and IFNAR knockout mice
RNA-seq of coding RNA
Mus musculus
12
30/06/2018
-
ENA
36
-
Mutation in familial platelet disorder with predisposition to myeloid malignancies
DNA-seq
Homo sapiens
1
29/06/2018
-
ENA
60
-
RNA-seq of Candida intermedia growing in different media
RNA-seq of coding RNA
[Candida] intermedia
41
29/06/2018
-
ENA
38
-
RNA-seq of mouse crypts to investigate Rorc gamma t-deficient mice tissue repair compared to wild type controls
RNA-seq of coding RNA
Mus musculus
24
29/06/2018
-
ENA
33
-
Transcriptome profiling of Sinorhizobium meliloti Rm1021 grown in semisolid media (MM) in presence of 2-tridecanone (2-TDC)
transcription profiling by array
Sinorhizobium meliloti
3
29/06/2018
-
37
-
Gene expression profile of microdissected mucinous cystic neoplasms of the pancreas
transcription profiling by array
Homo sapiens
6
28/06/2018
-
44
-
Gene-expression profile of human embryonic germ cells
transcription profiling by array
Homo sapiens
11
28/06/2018
-
64
-
Gene expression profile of microdissected mucinous ovarian tumors
transcription profiling by array
Homo sapiens
17
28/06/2018
-
55
-
Anopheles coluzzii small RNAseq
RNA-seq of non coding RNA
Anopheles coluzzii
16
28/06/2018
-
ENA
39
-
Anopheles coluzzii RNAseq
RNA-seq of coding RNA
Anopheles coluzzii
16
28/06/2018
-
ENA
41
-
Molecular Profiling of Chemoresistant Slow Cycling Cancer-Initiating Cells from human colorectal cancer, glioma and melanoma
transcription profiling by array
Homo sapiens
79
28/06/2018
60
-
Mapping hnRNP H binding sites on RON wildtype minigene and RON mutant minigenes via iCLIP
CLIP-seq
Homo sapiens
10
27/06/2018
-
ENA
48
-
Mapping hnRNP H binding sites on the RON wildtype minigene via iCLIP
CLIP-seq
Homo sapiens
2
27/06/2018
-
ENA
49
-
DNA-seq of a library of mutated minigene reporters
DNA-seq
Homo sapiens
2
27/06/2018
-
ENA
51
-
RNA-seq of the spliced products from a mutated minigene reporter library under control and hnRNP H knockdown conditions in MCF-7 cells
RNA-seq of coding RNA
Homo sapiens
6
27/06/2018
-
ENA
65
-
RNA-seq of the spliced products from a mutated minigene reporter library in HEK293T cells
RNA-seq of coding RNA
Homo sapiens
3
27/06/2018
-
ENA
50
-
Lotus japonicus response to Nod factor: wild type and nfre mutants
RNA-seq of coding RNA
Lotus japonicus
12
27/06/2018
-
ENA
51
-
RNA-seq of hepatocytes obtained through step-wise differentiation of hIPSCs from a patient with A1AT deficiency and its point mutation-corrected isogenic hIPSC line. Comparison to primary hepatocytes from a healthy donor and an A1AT-deficient patient
RNA-seq of coding RNA
Homo sapiens
8
26/06/2018
-
ENA
42
-
Expression data from draining lymph node and muscle of mice immunised with AS03 or PBS
transcription profiling by array
Mus musculus
35
26/06/2018
-
43
Gene expression profiling of patient-derived glioblastoma stem cell cultures
transcription profiling by array
Homo sapiens
16
26/06/2018
-
69
-
RNA-seq of Bacillus subtilis (i) sigI-rsgI knock-out strain, (ii) rsgI disrupted strain, and (iii) wt strains during growth at 52°C and 37°C
RNA-seq of coding RNA
Bacillus subtilis subsp. subtilis str. 168
18
26/06/2018
-
ENA
55
-
RNA-Seq of RAW 264.7 cells stimulated with the AS03 adjuvant after 4 and 8 hours
RNA-seq of coding RNA
Mus musculus
48
26/06/2018
ENA
54
Single-cell RNA-seq data of mammary gland epithelial cells from different gestational stages to detect and remove barcode swapping
RNA-seq of coding RNA from single cells
Mus musculus
160
25/06/2018
ENA
81
-
ChIP-seq analysis of bZIP73 binding sites in rice seedlings (Zhonghua11)
ChIP-seq
Oryza sativa Japonica Group
4
25/06/2018
-
ENA
36
-
NAT10 inhibition improves cellular phenotypes of Hutchinson-Gilford progeria syndrome by restoring the Transportin-1 pathway
transcription profiling by array
Homo sapiens
36
25/06/2018
-
35
-
Single-cell RNA sequencing of OT-I CD8+ T cells after stimulation with different affinity ligands
RNA-seq of coding RNA
Mus musculus
952
25/06/2018
ENA
69
-
ChIP-seq for Prep on whole zebrafish embryos at 3.5 and 12hpf
ChIP-seq
Danio rerio
8
25/06/2018
ENA
38
-
Foxp3+ regulatory T cells control psoriasiform skin inflammation by restraining a type 1 interferon driven CD8+ T cell response
transcription profiling by array
Mus musculus
18
24/06/2018
-
46
-
Transcriptomic analysis of the developing cerebellum in a mouse model for SRD5A3-CDG
transcription profiling by array
Mus musculus
8
24/06/2018
-
50
-
Methylation array for Multi-omics molecular profiling of primary prostate adenocarcinoma
methylation profiling by array
Homo sapiens
390
24/06/2018
50
-
Expression array for Multi-omics molecular profiling of primary prostate adenocarcinoma
transcription profiling by array
Homo sapiens
141
24/06/2018
-
63
-
SNP array for Multi-omics molecular profiling of primary prostate adenocarcinoma
genotyping by array
Homo sapiens
132
24/06/2018
-
72
-
Gene expression profiles of human breast cancer cell lines MCF-7, T47D and MDA-MB-231 co-cultured with 3T3-L1 adipocytes
transcription profiling by array
Homo sapiens
18
22/06/2018
77
-
Single cell RNA-sequencing of PBMC derived B cells from human healthy donor
RNA-seq of coding RNA from single cells
Homo sapiens
117
22/06/2018
-
ENA
70
-
RNA-Seq of murine lung tissue and blood treated with S. pneumoniae TIGR4 or S. aureus USA300 against PBS controls
RNA-seq of coding RNA
Mus musculus
36
22/06/2018
-
ENA
43
-
Single cell RNA-sequencing of T cells to examine barcode swapping
RNA-seq of coding RNA from single cells
Mus musculus
960
21/06/2018
ENA
66
-
RNA-seq of cultured parasites supplemented with sodium L-lactate
RNA-seq of coding RNA
Plasmodium falciparum 3D7
9
20/06/2018
-
ENA
55
-
Dual RNA-seq of peripheral blood from Gambian children with severe or uncomplicated Plasmodium falciparum malaria
RNA-seq of coding RNA
Homo sapiens
53
20/06/2018
-
ENA
55
-
microRNA array on plasma from two diffuse large B-cell lymphoma patients and one healthy donor
microRNA profiling by array
Homo sapiens
9
20/06/2018
59
-
TAP RNA-IP - MKT1
RNA-seq of coding RNA
Trypanosoma brucei
4
18/06/2018
-
ENA
46
-
TAP RNA-IP - ZC3H22
RNA-seq of coding RNA
Trypanosoma brucei
4
18/06/2018
-
ENA
46
-
TAP RNA-IP - MKT1L
RNA-seq of coding RNA
Trypanosoma brucei
4
18/06/2018
-
ENA
49
-
Whole transcriptome analysis of rat peritoneal cells in a TGFβ1 induced mesothelial-to-mesenchymal transition
RNA-seq of coding RNA
Rattus norvegicus
10
18/06/2018
-
ENA
46
RNA-seq of blood taken from patients suffering from sleeping sickness and infected with Trypanosoma brucei rhodesiense
RNA-seq of coding RNA
Homo sapiens
9
18/06/2018
-
ENA
56
-
Single-cell RNA-seq of de-differentiated mammary adipocytes during lactation
RNA-seq of coding RNA from single cells
Mus musculus
79
17/06/2018
ENA
50
-
ChIP-seq of Mycobacterium smegmatis PafBC to identify in vivo binding sites
ChIP-seq
Mycobacterium smegmatis str. MC2 155
16
17/06/2018
ENA
52
-
RNA-seq of Mycobacterium smegmatis mc2-155 SMR5 wild-type vs. a pafBC deletion strain under different growth/stress conditions
RNA-seq of coding RNA
Mycobacterium smegmatis str. MC2 155
12
17/06/2018
ENA
62
-
modified iCLIP experiment with the addition of a 5'marker to identify read-through reads
CLIP-seq
Homo sapiens
6
15/06/2018
-
ENA
60
-
RNA-seq of mouse wildtype HSCs purified from recipient mice co-transplanted with wildtype or different types of lymphoid cell deficient HSCs
RNA-seq of coding RNA
Mus musculus
11
14/06/2018
-
ENA
50
-
RNA-seq of wild-type and Tbx20 homozygous knockout E11.5 mouse cardiomyocytes to study Tbx20's roles in embryonic and adult mouse heart function
RNA-seq of coding RNA
Mus musculus
8
14/06/2018
-
ENA
82
-
RNA-seq across tissues in four Notothenioid species (Antarctic icefish)
RNA-seq of coding RNA
Harpagifer antarcticus, Neopagetopsis ionah, Parachaenichthys charcoti, Pseudochaenichthys georgianus
58
13/06/2018
-
ENA
56
-
RNA-seq of Myd88 cKO fibroblast reticular cells in mouse omentum on exposure to Salmonella typhi OmpC/F to investigate adaptive immunity
RNA-seq of coding RNA
Mus musculus
13
12/06/2018
-
ENA
66
-
Cell-of-origin epigenetic signatures are maintained during colorectal carcinogenesis
methylation profiling by array
Homo sapiens
146
12/06/2018
-
98
-
RNA-Seq on Malus domestica Braeburn x Cameo lines resistant and susceptible to bitter pit disorder
RNA-seq of coding RNA
Malus domestica
4
12/06/2018
-
ENA
58
-
Methylation arrays delineate the extent of 5mC and 5hmC in human brain and glioma samples
methylation profiling by array
Homo sapiens
56
12/06/2018
-
89
-
RNA-seq analysis of several in vitro models of hepatocyte function: Project 4 of Open Targets - Epigenomes of Cell Lines
RNA-seq of coding RNA
Homo sapiens
18
11/06/2018
-
ENA
93
-
RNA-seq analysis of two common T cell models, HUT78 and JURKAT E6.1: Project 5 of Open Targets - Epigenomes of Cell Lines
RNA-seq of coding RNA
Homo sapiens
8
11/06/2018
-
ENA
79
-
RNA-seq analysis of several immortalized B cell lines (Namalwa, Daudi, Ramos, Raji, Toledo, ARH-77): Project 6 of Open Targets - Epigenomes of Cell Lines
RNA-seq of coding RNA
Homo sapiens
12
11/06/2018
-
ENA
75
-
Microarray analyses of mouse dorsal root ganglia tissue for six different pain models
transcription profiling by array
Mus musculus
47
11/06/2018
-
82
-
Transcriptional analysis of differential immune and inflammatory responses to Sarcoptes scabiei infestation in a porcine model
transcription profiling by array
Sus scrofa
60
11/06/2018
-
60
-
Transcription profiling by array of CD4+ T cell or CD14 positive monocyte lysates or whole blood samples taken from kidney transplant recipients treated with or without Belimumab
transcription profiling by array
Homo sapiens
171
11/06/2018
-
55
-
ChIP-seq experiment to determine the genomic binding sites of mutant V5-tagged ZFHX2 R1913K protein in a stable-expressing human SH-SY5Y neuroblastoma cell line
ChIP-seq
Homo sapiens
3
11/06/2018
-
ENA
70
-
Microarray of BAC transgenic Zfhx2 p.R1907K mutant mice (4 genomic copies) versus wild-types
transcription profiling by array
Mus musculus
12
11/06/2018
-
82
-
Sequencing 5-hydroxymethyluracil via chemical modification and mismatch formation
DNA-seq
synthetic construct
42
08/06/2018
-
ENA
89
-
Methylation arrays (MethylationEPIC) reveal specific DNA hypermethylation of T cells during human hematopoietic differentiation
methylation profiling by array
Homo sapiens
10
08/06/2018
58
-
Microarray analysis of transcription changes in zebrafish embryos of different developmental ages after exposure to cyanide
transcription profiling by array
Danio rerio
12
08/06/2018
64
-
ATAC-seq of HEK293 cells with Alu-motif targeted dCas9GFP
ATAC-seq
Homo sapiens
9
07/06/2018
-
ENA
71
-
DNA methylome analysis of human pluripotent stem cells reprogrammed with CRISPRa
methylation profiling by array
Homo sapiens
64
07/06/2018
-
211
-
STRT RNAseq of human foreskin fibroblasts undergoing CRISPRa reprogramming
RNA-seq of coding RNA
Homo sapiens
44
07/06/2018
-
ENA
70
-
STRT RNAseq of pluripotent stem cells reprogrammed with CRISPRa
RNA-seq of coding RNA
Homo sapiens
26
07/06/2018
-
ENA
181
-
Possible role of Adrenomedullin and PLAUR in Hereditary Angioedema attacks: a transcriptomic analysis
transcription profiling by array
Homo sapiens
25
07/06/2018
-
46
-
Microarray on wild-type and mutant Hesx1 embryonic stem (ES) cells cultured in serum/LIF
transcription profiling by array
Mus musculus
3
07/06/2018
-
46
-
TMC-SNPdb: An Indian germline variant dataset derived from whole exome sequence
DNA-seq
Homo sapiens
62
06/06/2018
-
ENA
77
-
Transcription profiling by array to investigate psoriasis risk and non-risk isoforms of CCHCR1 in HEK293 cells
transcription profiling by array
Homo sapiens
15
04/06/2018
71
Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair
DNA-seq
Homo sapiens, Mus musculus
105
04/06/2018
-
ENA
65
-
Time series RNAseq of apical tissues along 4 developmental stages of development (I-III : vegetative stage; IV: sexually mature) in Mercurialis annua
RNA-seq of coding RNA
Mercurialis annua
24
04/06/2018
-
ENA
54
-
RNASeq of mature leaf and root tissues, before and after flowering, in Mercurialis annua
RNA-seq of coding RNA
Mercurialis annua
40
04/06/2018
-
ENA
49
-
RNA-Seq of BW25113 Escherichia coli (wild-type and a mutant lacking yeaG) experiencing initial and sustained nitrogen starvation in Gutnick minimal media
RNA-seq of coding RNA
Escherichia coli K-12
14
04/06/2018
-
ENA
59
-
Genomic sequencing of T. brucei cell lines resistant to AN7973
DNA-seq
Trypanosoma brucei brucei
5
04/06/2018
ENA
48
-
Profiling of mRNA expression in irritable bowel syndrome vs healthy controls
transcription profiling by array
Homo sapiens
30
03/06/2018
67
-
Transcription profiling by array of wild type pea seeds and seeds with embryo-specific expression of a bacterial trehalose 6-phosphate phosphatase (TPP), encoded by the otsB gene to investigate the influence of decreased T6P content on gene expression in developing cotyledons
transcription profiling by array
Pisum sativum
23
01/06/2018
64
-
RNA-seq of primary murine (C57BL/6J) LSK cells overexpressing miR-10a or miR-335
RNA-seq of coding RNA
Mus musculus
9
01/06/2018
-
ENA
60
-
RNA-seq to investigate impact of treatment of KRAS mutant NCI-H2009 lung adenocarcinoma cells with the multi-ERBB inhibitor Neratinib
RNA-seq of coding RNA
Homo sapiens
6
01/06/2018
-
ENA
82
RNA-seq to investigate impact of treatment of KRAS mutant NCI-H358 lung adenocarcinoma cells with the multi-ERBB inhibitor Neratinib
RNA-seq of coding RNA
Homo sapiens
6
01/06/2018
-
ENA
77
RNA-seq to investigate impact of treatment of KRAS mutant A549 lung adenocarcinoma cells with the multi-ERBB inhibitor Neratinib
RNA-seq of coding RNA
Homo sapiens
6
01/06/2018
-
ENA
69
RBM7 activates P-TEFb for a pro-survival transcriptional response to DNA damage
CLIP-seq
Homo sapiens
6
01/06/2018
-
ENA
79
-
Progression of KRas^G12D;Rosa26-MYC tumours to invasive disease
RNA-seq of coding RNA
Mus musculus
8
01/06/2018
-
ENA
70
-
Transcriptome profiling of wild type, K159/298Q- and K159/298R- C/EBPα expressing mouse cells
RNA-seq of coding RNA
Mus musculus
9
01/06/2018
-
ENA
63
-
Transcription profiling by array of fetal RNA from amniotic fluid of twin-to-twin syndrome pregnancies compared to control single pregnancies
transcription profiling by array
Homo sapiens
32
01/06/2018
-
46
-
RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
RNA-seq of coding RNA
Triticum aestivum
12
01/06/2018
-
ENA
60
RNA-seq analysis of EpiSCs undergoing differentiation induced by EB formation
RNA-seq of coding RNA
Mus musculus
6
01/06/2018
ENA
62
-
ChIP-seq analysis of Esrrb, Nanog, Oct4, and Sox2 in EpiSCs undergoing reprogramming
ChIP-seq
Mus musculus
25
01/06/2018
ENA
112
-
Microarray analysis of EpiSCs undergoing reprogramming by Esrrb
transcription profiling by array
Mus musculus
34
01/06/2018
-
59
-
Differentiating liposarcoma from lipoma using a simple blood test: A miRNA signature
transcription profiling by array
Homo sapiens
10
01/06/2018
-
81
-
Nucleosome occupancy during NuRD complex induction
MNase-seq
Mus musculus
9
31/05/2018
-
ENA
53
-
Transcription profiling by RNA-seq during NuRD complex induction in mouse embryonic stem cells
RNA-seq of coding RNA
Mus musculus
24
31/05/2018
-
ENA
49
RNA-seq profiling of nascent transcription during NuRD complex induction in mouse embryonic stem cells
RNA-seq of coding RNA
Mus musculus
18
31/05/2018
-
ENA
45
-
Transcription factor binding and epigenetic modifications during NuRD complex induction
ChIP-seq
Mus musculus
126
31/05/2018
-
ENA
138
-
ChIP-seq of CIC (Capicua) and histone marks (H3K9ac, H3K27ac and H3K4me1) in glioma neural stem cells (GNS) G144, human foetal neural stem cells (hNSC) and mouse embryonic stem cells (mESC),
ChIP-seq
Homo sapiens, Mus musculus
33
31/05/2018
ENA
151
-
RNA-seq of Glioma Neural Stem (GNS) cell line G144 after MEK inhibition in wild type (WT) and CIC (Capicua) depleted cells
RNA-seq of coding RNA
Homo sapiens
27
31/05/2018
-
ENA
80
Transcription profiling by array of pulmonary gene expression in response to interleukin-22 during severe influenza
transcription profiling by array
Mus musculus
19
31/05/2018
-
43
Identification of target genes of Cud-type transcription factor, spaA, in a Dictyostelid social amoebae by ChIP-seq
ChIP-seq
Dictyostelium discoideum
6
31/05/2018
-
ENA
58
-
Whole Transcriptome sequencing TSCC (tongue squamous cell carcinoma)
RNA-seq of coding RNA
Homo sapiens
15
31/05/2018
-
ENA
75
-
Whole exome sequencing of TSCC (tongue squamous cell carcinoma)
DNA-seq
Homo sapiens
24
31/05/2018
-
ENA
65
-
scRNA-seq of mouse subcutaneous Lin- SVF cells
RNA-seq of coding RNA from single cells
Mus musculus
1
30/05/2018
-
78
-
Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes
transcription profiling by array
Arabidopsis thaliana
12
29/05/2018
-
87
Hypothalamic DNA-methylation differences in Red Junglefowl divergently selected for reduced fear of humans
MeDIP-seq
Gallus gallus
12
29/05/2018
-
ENA
45
-
RNA-seq of PDAC tissues grown as patient-derived tumor xenografts
RNA-seq of coding RNA
Homo sapiens
24
29/05/2018
-
ENA
93
-
ChIP-seq of PDAC tissues grown as patient-derived tumor xenografts
ChIP-seq
Homo sapiens
144
29/05/2018
-
ENA
160
-