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AccessionTitleTypeOrganismAssaysReleasedProcessedRawViewsAtlas
RNA-sequencing of the mRNA transcriptome in lesional and non-lesional skin, across three time-points in severe psoriasis patients treated with the tumor necrosis factor (TNF) inhibitor, etanercept
RNA-seq of coding RNA
Homo sapiens
59
21/09/2018
ENA
-
-
RNA-sequencing of the small-RNA transcriptome in blood, across three time-points in severe psoriasis patients treated with the tumor necrosis factor (TNF) inhibitor, etanercept
microRNA profiling by high throughput sequencing
Homo sapiens
30
21/09/2018
-
ENA
-
-
Surface topography enhances differentiation of mesenchymal stem cells towards osteogenic and adipogenic lineages
transcription profiling by array
Homo sapiens
9
20/09/2018
-
-
RNA-seq of Chenopodium quinoa salt glands compared to whole leaves with or without salt glands
RNA-seq of coding RNA
Chenopodium quinoa
12
20/09/2018
-
ENA
10
-
Differential gene expression study in brain samples from patients suffering distinct frontotemporal lobar degeneration (FTLD) conditions
transcription profiling by array
Homo sapiens
30
19/09/2018
-
3
-
Bulk segregant analysis of 3D growth defective mutant in Physcomitrella patens (Vx501)
DNA-seq
Physcomitrella patens
4
19/09/2018
-
ENA
3
-
Cell-free serum miRNA signature of synovial sarcoma
transcription profiling by array
Homo sapiens
15
19/09/2018
3
-
RNAseq of murine brown fat, white fat and skeletal muscle
RNA-seq of coding RNA
Mus musculus
9
18/09/2018
-
ENA
20
-
Gene expression microarray of human pulmonary endothelial cells from patients with Chronic Obstructive Pulmonary Disease in comparison with normal controls
transcription profiling by array
Homo sapiens
14
18/09/2018
10
-
RNAseq of murine myoblast used as cell type control
RNA-seq of coding RNA
Mus musculus
3
16/09/2018
-
ENA
30
-
Microarray mRNA data of RPTEC/TERT1 cells exposed to nephrotoxic chemicals ochratoxin A and potassium bromate
transcription profiling by array
Homo sapiens
36
16/09/2018
-
28
-
Differential expression of E. coli(pBIC-1a) under imipenem exposure
RNA-seq of coding RNA
Escherichia coli K-12
6
15/09/2018
-
ENA
22
-
RNA-Seq of sorted and unsorted prophage-induced subpopulations in Corynebacterium glutamicum
RNA-seq of coding RNA
Corynebacterium glutamicum
44
15/09/2018
-
ENA
35
-
Quiescent endothelial cells upregulate fatty acid β-oxidation for vasculoprotection via redox homeostasis
RNA-seq of coding RNA
Mus musculus
6
12/09/2018
-
ENA
31
-
Microarray analysis of mouse cerebral cortex from brain-specific Bmal1 knockout and Per1;Per2 double mutant mice at 2 timepoints
transcription profiling by array
Mus musculus
16
11/09/2018
-
30
-
miRNA microarray of human pulmonary endothelial cells comparing patients with and without Chronic Obstructive Pulmonary Disease
transcription profiling by array
Homo sapiens
21
10/09/2018
31
-
Transcription profiling by array of mouse E15.5 FACS sorted pancreas populations based on double fluorescent reporter (Hes1GFP and Neurog3-RFP), DBA staining and Ptf1a-YFP
transcription profiling by array
Mus musculus
13
10/09/2018
-
24
-
Transcription profiling of healthy rat colonocytes and colonocytes treated with Trinitrobenzenesulfonic acid to investigate colitis
transcription profiling by array
Rattus norvegicus
1
10/09/2018
30
-
Eight in situ Hi-C experiments of mouse OG2 stem cells for 7 different starting material and that were digested by either HindIII (2 samples) or MboI (6 samples) restriction enzymes. Plus two peripheral blood mononuclear cells (PBMCs) samples obtained either from a blood extraction of a healthy donor or from a lymph node biopsy from a DLBCL patient
Hi-C
Homo sapiens, Mus musculus
16
09/09/2018
ENA
42
-
Salmonella Typhi adaptation to survival in water
RNA-seq of coding RNA
Salmonella enterica subsp. enterica serovar Typhi
12
07/09/2018
ENA
31
-
The transcriptional regulator TFB-RF1 activates transcription of a putative ABC transporter in Pyrococcus furiosus
ChIP-seq
Pyrococcus furiosus
4
07/09/2018
-
ENA
33
-
Whole-genome resequencing of Pseudomonas aeruginosa PAO1 after anti-virulence treatments targeting iron uptake
genotyping by high throughput sequencing
Pseudomonas aeruginosa
16
07/09/2018
-
ENA
36
-
A five-microRNA-signature predicting recurrence in HNSCC
microRNA profiling by array
Homo sapiens
162
06/09/2018
-
28
-
Investigation of titanium discs produced by Straumann on human mesenchymal stromal cells
transcription profiling by array
Homo sapiens
27
05/09/2018
1
-
RNA-seq of total and polysomal RNA of clk-1(qm30) mutants in Caenorhabditis elegans
RNA-seq of coding RNA
Caenorhabditis elegans
18
05/09/2018
-
ENA
81
-
Global gene expression analysis of H4T80A mutants vs WT H4 in Saccharomyces cerevisiae
RNA-seq of coding RNA
Saccharomyces cerevisiae
24
05/09/2018
ENA
43
-
Promoter Capture Hi-C of mouse ESC and TSC
Hi-C
Mus musculus
4
05/09/2018
ENA
48
-
mRNA profiling by array for pancreatic ductal adenocarcinoma for clinical application
transcription profiling by array
Homo sapiens
309
04/09/2018
39
-
mRNA-seq of human cells lines derived from Papillary thyroid carcinoma (TPC1) transfected with siRNA against BHLHE40 (DEC1) or with scramble control siRNA
RNA-seq of coding RNA
Homo sapiens
4
03/09/2018
-
ENA
61
-
RNA-seq of human melanoma cell line A375 treated with the tetracycline analogs Col-3 or doxycycline against untreated controls
RNA-seq of coding RNA
Homo sapiens
9
01/09/2018
-
ENA
61
-
A role for differential gene regulation in the rapid diversification of melanic plumage coloration in the dark-eyed junco (Junco hyemalis)
RNA-seq of coding RNA
Junco hyemalis
29
01/09/2018
-
ENA
44
-
Transcriptomic profiling of three different neuroblastoma cell lines (CLB-BAR, CLB-GE and SK-N-AS) in response to ALK inhibition
RNA-seq of coding RNA
Homo sapiens
17
01/09/2018
-
ENA
49
-
Differential Regulation of Th17 and Th1 Cells in mouse by Glutaminase-Dependent Metabolism and Chromatin Remodeling
ATAC-seq
Mus musculus
12
01/09/2018
-
ENA
49
-
RNA-seq to investigate gene expression profile associated with long-non coding RNA RAIN in TPC1 cells
RNA-seq of coding RNA
Homo sapiens
6
01/09/2018
-
ENA
50
-
RNAseq of Mucor strains cultured on potato dextrose agar (PDA)
RNA-seq of coding RNA
Mucor circinelloides, Mucor endophyticus, Mucor fuscus, Mucor lanceolatus, Mucor racemosus
5
01/09/2018
-
ENA
44
-
RNA-seq of chicken lines Broiler and Fayoumi bursal transcriptomes in response to heat stress and lipopolysaccharide
RNA-seq of coding RNA
Gallus gallus
62
01/09/2018
-
ENA
44
-
Influence of NSD3 and ESR1 knockdown on gene expression in SUM-44 cells
transcription profiling by array
Homo sapiens
9
01/09/2018
32
-
Copy Number Variation (CNV) analysis of grade III 1p/19q co-deleted glioma
comparative genomic hybridization by array
Homo sapiens
197
01/09/2018
-
35
-
Myeloid lineage switch in pro-B cells generates novel macrophage subsets during homeostasis and inflammation
transcription profiling by array
Mus musculus
30
01/09/2018
43
-
RNA-Seq of A375 cells treated with tetracycline-based crosslinking probes, with and without competition by parent tetracyclines, to show specific binding of the tetracycline analogs Col-3 and doxycycline on rRNA substructures of the human ribosome
RNA-seq of coding RNA
Homo sapiens
18
31/08/2018
-
ENA
36
-
RNA-seq of equine and canine mammary stem cells treated with DMBA
RNA-seq of coding RNA
Canis lupus familiaris, Equus caballus
12
31/08/2018
-
ENA
31
-
miR-196a is able to restore the aggressive phenotype of Annexin A1 CRISPR/Cas9 knock-out pancreatic cancer cells
microRNA profiling by high throughput sequencing
Homo sapiens
6
31/08/2018
-
ENA
32
-
Gene expression in Arabidopsis CAF-1 mutant leaves
transcription profiling by array
Arabidopsis thaliana
9
31/08/2018
-
23
-
CG200745, an HDAC inhibitor, induces anti-tumour effects in cholangiocarcinoma cell lines targeting the Hippo pathway
transcription profiling by array
Homo sapiens
16
31/08/2018
-
35
-
RNA-Seq of A375 cells treated with tetracycline-based crosslinking probes to identify binding sites for the tetracycline analogs Col-3 and doxycycline on the human ribosome
RNA-seq of coding RNA
Homo sapiens
18
30/08/2018
-
ENA
31
-
Expression profiling of K-Ras-driven lung carcinogenesis upon the genetic absence of Enpp2 from pulmonary cells
transcription profiling by array
Mus musculus
6
30/08/2018
-
23
-
Transcriptomic analysis of Responsive and Non-responsive Human NK cells to Plasmodium falciparum-infected red blood cells
transcription profiling by array
Homo sapiens
20
30/08/2018
-
33
-
Human notochordal cell transcriptome in the developing intervertebral disc
transcription profiling by array
Homo sapiens
7
29/08/2018
30
-
Phosphoglycerate dehydrogenase causes electron transport chain defect via impaired heme synthesis: RNA sequencing
RNA-seq of coding RNA
Homo sapiens
6
29/08/2018
-
ENA
46
-
RNAseq of isolated mitotic HeLa cells treated with Actinomycin D
RNA-seq of coding RNA
Homo sapiens
25
28/08/2018
ENA
43
-
RNA-seq of heart left ventricle during myocardial ischemia in TAB-1 knock-in mice compared to wild type controls
RNA-seq of coding RNA
Mus musculus
10
27/08/2018
-
ENA
44
-
Sox2 ChIP-seq in hindbrain and spinal cord neural progenitors differentiated from mouse embryonic stem cells
ChIP-seq
Mus musculus
8
27/08/2018
-
ENA
35
-
ATAC-seq on ESCs undergoing directed differentiation towards defined neural fates
ATAC-seq
Mus musculus
44
27/08/2018
-
ENA
43
-
Illumina microarray analysis of brain regions following acute exposure to bilirubin or LPS
transcription profiling by array
Mus musculus
96
26/08/2018
33
-
Illumina microarray analysis of MCF7 and SHSY5Y cells exposed to bilirubin
transcription profiling by array
Homo sapiens
12
25/08/2018
43
-
RNA-seq of total RNA from human adipose tissue stem cells induced to adipogenesis and osteogenesis for 24 hours
RNA-seq of coding RNA
Homo sapiens
36
24/08/2018
-
ENA
52
-
RNA-seq of coding RNA (polysomal and free fraction) from human adipose tissue stem cells treated with cyclopamine, purmorphamine and DMSO
RNA-seq of coding RNA
Homo sapiens
18
24/08/2018
-
ENA
44
-
RNA seq of Saccharomyces cerevisiae expressing pathways designed to increase ATP or GTP consumption
RNA-seq of coding RNA
Saccharomyces cerevisiae
209
23/08/2018
-
ENA
48
RNA-Seq of developing shoot apical meristems of barley cultivar Golden Promise (null segregant and Ubi::HvFT3 overexpressor) grown under long- and short-day photoperiods
RNA-seq of coding RNA
Hordeum vulgare subsp. vulgare
24
21/08/2018
-
ENA
39
-
Determining open chromatin profiles of a specific population of cells isolated from zebrafish embryos at 10 hours post fertilization using the ATAC-seq method
ATAC-seq
Danio rerio
4
21/08/2018
-
ENA
45
-
RNA-seq of Pseudomonas aeruginosa PAO1 wild-type and mexZ transcriptional regulator knockout mutant
RNA-seq of coding RNA
Pseudomonas aeruginosa PAO1
6
21/08/2018
-
ENA
47
-
RNA-seq of Pdx1-GFP+ sorted E10.5, wildtype and Hes1-/-. Neurog3-dependent Pancreas Dysgenesis Causes Ectopic Pancreas in Hes1 Mutants
RNA-seq of coding RNA
Mus musculus
11
20/08/2018
-
ENA
48
-
Determining single-cell mRNA expression profiles of a specific population isolated from zebrafish embryos at 10 hours post fertilization
RNA-seq of coding RNA from single cells
Danio rerio
102
20/08/2018
-
ENA
47
-
Intestinal expression in murine antibiotic-induced acceleration of Type 1 diabetes
RNA-seq of coding RNA
Mus musculus
66
19/08/2018
-
ENA
59
-
Single cell sequencing of 3 lung carcinomas
RNA-seq of coding RNA from single cells
Homo sapiens
12
18/08/2018
-
ENA
161
-
RNA-seq of IMR-5/75 neuroblastoma cell line treated with JQ1, THZ1 or combination against untreated controls
RNA-seq of coding RNA
Homo sapiens
64
17/08/2018
-
ENA
51
-
Single cell RNA-seq of WTC-CRISPRi human induced pluripotent stem cells
RNA-seq of coding RNA from single cells
Homo sapiens
5
17/08/2018
ENA
181
-
RNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout
RNA-seq of coding RNA
Arabidopsis thaliana
6
16/08/2018
-
ENA
58
-
Genome-wide analysis reveals that budding yeast Rif1 binds to replication origins and at blocked replication forks to protect nascent DNA
ChIP-seq
Saccharomyces cerevisiae
16
16/08/2018
-
ENA
50
-
RNA-seq of IMR-5/75 neuroblastoma cell line upon TBX2 and/or MYCN knockdown
RNA-seq of coding RNA
Homo sapiens
144
16/08/2018
-
ENA
49
-
RNA-seq of CLB-GA neuroblastoma cell line upon TBX2 knockdown
RNA-seq of coding RNA
Homo sapiens
36
16/08/2018
-
ENA
48
-
ATAC-seq in neuroblastoma IMR-32 cell line
RNA-seq of coding RNA
Homo sapiens
4
16/08/2018
-
ENA
55
-
RNA-seq of cold-induced transcriptome changes in skeletal muscle of beta-adrenergic receptor knockout mice
RNA-seq of coding RNA
Mus musculus
16
16/08/2018
-
ENA
100
RNA-seq of cold-induced transcriptome changes in subcutaneous adipose tissue of beta-adrenergic receptor knockout mice
RNA-seq of coding RNA
Mus musculus
16
16/08/2018
-
ENA
34
RNA-seq of GFP+ (Myod-lineage) progenitor cells versus Tomato+ progenitor cells from inguinal WAT of Myod-driven mTmG reporter mice
RNA-seq of coding RNA
Mus musculus
2
15/08/2018
-
ENA
38
-
Myod-lineage beige adipose tissue identification
RNA-seq of coding RNA
Mus musculus
6
15/08/2018
-
ENA
36
-
RNA-Seq of T cells sorted from human PBMCs, or from T cells stimulated with CD3/CD28 beads for 4 days, or from the spleen of NSG or NSG-HLA-A2/HHD mice, 7 days after transplantation with human PBMCs
RNA-seq of coding RNA
Homo sapiens
68
14/08/2018
-
ENA
42
-
Whole exome sequencing analyses of human, IDH2-mutated, acute myeloid leukemia samples from patients before or during treatment with Enasidenib
DNA-seq
Homo sapiens
47
13/08/2018
-
ENA
51
-
ChIP-seq of tumour associated macrophages derived from high grade ovarian serous carcinoma patient ascites
ChIP-seq
Homo sapiens
9
13/08/2018
-
ENA
48
-
Bioinformatics-based selection of a model cell type for in vitro biomaterial testing
transcription profiling by array
Homo sapiens
54
12/08/2018
38
-
9-(S)-HODE treatment of Drosophila S2 cells
transcription profiling by array
Drosophila melanogaster
4
12/08/2018
-
41
-
Microarray analysis for leaves of Arabidopsis thaliana Col-0 plants fumigated with nitrogen dioxide (treatment) or air (control)
transcription profiling by array
Arabidopsis thaliana
16
10/08/2018
36
-
In vitro systems toxicology-based assessment of the potential modified risk tobacco product CHTP1.2 for vascular inflammation- and cytotoxicity-associated mechanisms promoting adhesion of monocytic cells to human coronary arterial endothelial cells
transcription profiling by array
Homo sapiens
104
09/08/2018
32
-
RNA-seq of human ASCs expanded with 10% FBS and in FBS-deprived condition
RNA-seq of coding RNA
Homo sapiens
10
09/08/2018
ENA
33
-
miRNA-seq of human ASCs expanded with 10% FBS and in FBS-deprived condition
microRNA profiling by high throughput sequencing
Homo sapiens
10
09/08/2018
ENA
32
-
RNA sequencing of human, IDH2-mutated, acute myeloid leukemia samples from patients before or during treatment with Enasidenib
RNA-seq of coding RNA
Homo sapiens
4
08/08/2018
-
ENA
42
-
RNA-seq of rat microglia, mouse neurons and human astrocytes in co-culture, both in control conditions and challenged with LPS
RNA-seq of coding RNA
mixed sample
36
08/08/2018
-
ENA
38
-
Effect of MHC II expression in pro-B cells: Pre-B cells and follicular B cells from wild-type and MHC II conditional mice
RNA-seq of coding RNA
Mus musculus
16
07/08/2018
-
ENA
48
Effect of MHC II expression in pro-B cells: F6 leukaemic cell line
RNA-seq of coding RNA
Mus musculus
6
07/08/2018
-
ENA
44
-
Identification of Angustifolia 3 (ZmAN3) target genes through GSyellow-based ChIP-seq in Zea mays leaves
ChIP-seq
Zea mays
4
07/08/2018
-
ENA
41
-
Identification of Peopod2 (PPD2) target genes through GSyellow-based ChIP-seq in Arabidopsis thaliana PSB-D cell cultures
ChIP-seq
Arabidopsis thaliana
5
07/08/2018
-
ENA
43
-
Ribosome profiling of CLL patient samples
RNA-seq of coding RNA
Homo sapiens
14
07/08/2018
-
ENA
44
-
Next Generation Sequencing Transcriptomic Analysis (RNA-seq) of Thoroughbred horse at rest, after exercise and after training
RNA-seq of coding RNA
Equus caballus
61
07/08/2018
-
ENA
39
-
RNA-seq of one human cortex sample and one sample from the HAP1 cell line, used to illustrate the development and application of the JCC score
RNA-seq of coding RNA
Homo sapiens
2
06/08/2018
-
ENA
38
-
JAK2V617F mutant HSC microarray
transcription profiling by array
Mus musculus
9
06/08/2018
35
-
Diverse effects of cyclic AMP variants on osteogenic and adipogenic differentiation of human mesenchymal stromal cells
transcription profiling by array
Homo sapiens
18
05/08/2018
26
-
Full transcriptome analysis of MCF-7 cells treated with screening hit compounds versus control
transcription profiling by array
Homo sapiens
35
04/08/2018
-
26
-
Transcriptomic profile of human induced pluripotent stem cells at single cell resolution
RNA-seq of coding RNA from single cells
Homo sapiens
2
04/08/2018
-
26
-
RNA sequencing of CD57+ and CD57- effector memory CD8 T cells in patients with type 1 diabetes
RNA-seq of coding RNA
Homo sapiens
10
03/08/2018
-
ENA
40
-
The effects of endurance exercise and diet on atherosclerosis in young and aged ApoE-/- and WT mice
transcription profiling by array
Mus musculus
48
02/08/2018
35
-
RNAseq of Mercurialis annua control and selected lines after four generations of selection for increased male allocation in females
RNA-seq of coding RNA
Mercurialis annua
24
01/08/2018
-
ENA
31
-
Metatranscriptome of surface gravel plain soils from the hyperarid Central Namib Desert
RNA-seq of coding RNA
soil metagenome
12
01/08/2018
-
ENA
32
-
Velvet domain protein VosA represses the zinc cluster transcription factor SclB regulatory network for Aspergillus nidulans asexual development, oxidative stress response and secondary metabolism
RNA-seq of coding RNA
Aspergillus nidulans
9
31/07/2018
-
ENA
38
-
Microarray of tolerogenic dendritic cells differentiated in the presence of vitamin D3, dexamethasone or rapamycin
transcription profiling by array
Homo sapiens
25
31/07/2018
28
-
Bulk-cell RNA-seq analysis of early cutaneous wound healing in mouse
RNA-seq of coding RNA
Mus musculus
9
31/07/2018
-
ENA
31
-
TCR repertoire analysis by Next-generation sequencing of mouse CD8+ T cells in spleen or tumor
RNA-seq of coding RNA
Mus musculus
16
31/07/2018
-
ENA
26
-
Gene transcription profiling of Physcomitrella patens Pp_A_Doko#069 (DOKO69; Koprivova et al., 2004) protonema grown in liquid cultures
transcription profiling by array
Physcomitrella patens
3
31/07/2018
30
-
Whole transcriptome profiling of the steady state and Hh-treated (8 hrs) Alpk1+/- (heterozygous) and Alpk1-/- (knockout) BMDMs using RNA-Sequencing approach
RNA-seq of coding RNA
Mus musculus
12
30/07/2018
-
ENA
31
-
Transcriptome profiling of gene expression in the colon tissues of steady state and Helicobacter hepaticus-infected 129SvEvS6.Rag2−/− mice and the congenic strain 129.C3B.Rag2−/− R17
transcription profiling by array
Mus musculus
24
30/07/2018
-
30
-
Bulk RNA-sequencing of self-maintaining versus monocyte-replaced gut macrophages
RNA-seq of coding RNA
Mus musculus
62
30/07/2018
ENA
29
-
Single-cell RNA sequencing of self-maintaining lamina propria macrophages
RNA-seq of coding RNA from single cells
Mus musculus
1
30/07/2018
-
ENA
31
-
H3K14ac is linked to methylation of H3K9 by the Tudor domains of SETDB1
ChIP-seq
Mus musculus
6
30/07/2018
-
ENA
33
-
Transcriptome of the liver in 15-day-old C3H/HeJ mice
RNA-seq of coding RNA
Mus musculus
20
29/07/2018
ENA
27
-
Transcriptome profiles of C3H/HeJ mouse liver tumours
RNA-seq of coding RNA
Mus musculus
200
29/07/2018
ENA
28
-
Comparison of a resistant field population of Anopheles gambiae ss collected in Tiefora, Burkina Faso (2014) compared to a lab susceptible ss Anopheles gambiae Kisumu
transcription profiling by array
Anopheles gambiae
3
29/07/2018
-
30
-
Comparison of a resistant population of Anopheles gambiae ss, from Tiefora Burkina Faso, to a lab susceptible An. gambiae ss Kisumu
transcription profiling by array
Anopheles gambiae
4
29/07/2018
-
23
-
Comparison of a resistant field Anopheles coluzzii population from Banfora, Burkina Faso to lab susceptible N'Gousso 2014
transcription profiling by array
Anopheles gambiae
4
29/07/2018
-
24
-
Molecular profiling of Ctcf hemizygous mouse embryonic fibroblasts: HiC
Hi-C
Mus musculus
6
29/07/2018
-
ENA
30
-
Molecular profiling of Ctcf hemizygous mouse embryonic fibroblasts: ChIP-seq
ChIP-seq
Mus musculus
48
29/07/2018
ENA
39
-
Molecular profiling of Ctcf hemizygous mouse embryonic fibroblasts: RNA-seq
RNA-seq of coding RNA
Mus musculus
12
29/07/2018
ENA
37
-
RNA-seq of pooled ambystoma mexicanum tissues derived from a mix of developmental stages
RNA-seq of coding RNA
Ambystoma mexicanum
8
29/07/2018
-
ENA
30
-
APIM treatment of different cancer cell lines, short and long term
transcription profiling by array
Homo sapiens
168
29/07/2018
-
36
-
RNA-seq of hepatic biopsies taken from patients with chronic liver disease presenting with different aetiologies (HCV, FLD) and fibrosis stages
RNA-seq of coding RNA
Homo sapiens
69
28/07/2018
ENA
39
-
Microarray for duodenum epithelium of C57Bl6 PPARgVillinCRE and wild type mice submitted to 2 weeks 75% caloric restriction compared to ad libitum fed controls
transcription profiling by array
Mus musculus
12
27/07/2018
28
Single-cell RNA-seq of naive and primed human embryonic stem cells
RNA-seq of coding RNA from single cells
Homo sapiens
2687
26/07/2018
ENA
34
-
RNA-seq of mouse macrophages to investigate how interferon gene therapy reprograms the leukemia microenvironment
RNA-seq of coding RNA
Mus musculus
11
26/07/2018
-
ENA
42
-
Interferon gene therapy reprograms the leukemia microenvironment inducing protective immunity to multiple tumor antigens
RNA-seq of coding RNA from single cells
Mus musculus
5
25/07/2018
-
-
40
-
Time series experiment on L4 stage of Caenorhabditis elegans N2
transcription profiling by array
Caenorhabditis elegans
10
24/07/2018
-
28
-
HumanMethylation450 (450k) data for 79 rheumatoid arthritis disease discordant monozygotic twin pairs
methylation profiling by array
Homo sapiens
316
24/07/2018
-
27
-
Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression
microRNA profiling by high throughput sequencing
Sus scrofa
36
23/07/2018
ENA
45
-
24h time-course microarray study of SW480 and SW620 cells
transcription profiling by array
Homo sapiens
18
23/07/2018
-
38
-
Various evolutionary trajectories lead to loss of activity of tobramycin-potentiating compounds in Burkholderia cenocepacia biofilms
DNA-seq
Burkholderia cenocepacia
12
22/07/2018
-
ENA
44
-
Transcriptome analysis of HeLa cells upon deprivation of methionine and cysteine (Met/Cys)
RNA-seq of coding RNA
Homo sapiens
8
21/07/2018
-
ENA
61
-
Effect of the IRE1a-XBP1 pathway inhibition during T helper 2 differentiation
RNA-seq of coding RNA
Mus musculus
8
20/07/2018
-
ENA
40
-
Transcription profiling by array of B lymphoblasts derived from either control donors or patients with loss of function mutations in TTC7A
transcription profiling by array
Homo sapiens
10
19/07/2018
-
44
-
Klhl6 deficiency impairs transitional B cell survival and differentiation
transcription profiling by array
Mus musculus
12
17/07/2018
-
48
Single-cell RNA-seq of of human dermal fibroblasts (supplementary - different stimulation conditions of dsRNA)
RNA-seq of coding RNA from single cells
Homo sapiens
1920
16/07/2018
ENA
55
-
Single-cell RNA-seq of dermal fibroblasts (5 human individuals - IFNB stimulation)
RNA-seq of coding RNA from single cells
Homo sapiens
681
16/07/2018
ENA
53
-
Single-cell RNA-seq of of dermal fibroblasts (supplementary - human fibroblasts stimulation with dsRNA)
RNA-seq of coding RNA from single cells
Homo sapiens
590
16/07/2018
ENA
54
-
Bulk RNA-seq of of human dermal fibroblasts from up to 66 individuals (supplementary)
RNA-seq of coding RNA
Homo sapiens
168
16/07/2018
ENA
55
-
Single-cell RNA-seq of of bone marrow derived mononuclear phagocytes derived from mouse; rat; rabbit or pig
RNA-seq of coding RNA from single cells
Mus musculus, Oryctolagus cuniculus, Rattus norvegicus, Sus scrofa
68
16/07/2018
ENA
51
-
Transcriptome of Trypanosome brucei after PUF2 Knock-down - polysome fractions
RNA-seq of coding RNA
Trypanosoma brucei
3
16/07/2018
-
ENA
49
-
RNA-seq of mouse EL4 cells overexpressing Israa gene product in comparison with Mock-transfected control cells
RNA-seq of coding RNA
Mus musculus
2
15/07/2018
-
ENA
52
-
Transcriptomic effects of long-term pantethine treatment in the mouse Alzheimer's disease 5XFAD model
transcription profiling by array
Mus musculus
12
15/07/2018
-
51
-
RNA-seq of human neurons derived from H9 embryonic stem cell lines treated with BDNF, TrkB agonist ZEB 85 or NT4 against untreated controls
RNA-seq of coding RNA
Homo sapiens
192
13/07/2018
ENA
79
-
RNA-seq of mouse heart that is both heart SOD2 knockout and deficient for mitochondrial DNA repair
RNA-seq of coding RNA
Mus musculus
19
13/07/2018
-
ENA
52
-
DNA-seq of mitochondrial DNA from mouse heart that is both heart SOD2 knockout and deficient for mitochondrial DNA repair
DNA-seq
Mus musculus
43
13/07/2018
-
ENA
51
-
DNA-seq of mitochondrial DNA from liver of OGG1 and MUTYH deficient mice that have been bred for five consecutive generations
DNA-seq
Mus musculus
30
13/07/2018
-
ENA
45
-
Binding of the Zika virus genome to endogenous human transcripts
RNA-seq of non coding RNA
Homo sapiens
18
13/07/2018
-
ENA
49
-
Whole-exome sequencing of genomic DNA extracted from patient-derived melanoma cell lines grown in vitro
DNA-seq
Homo sapiens
8
12/07/2018
ENA
62
-
miRNA profiling array results in serum RNA (healthy volunteers and breast tumor patients)
microRNA profiling by array
Homo sapiens
7
12/07/2018
-
62
-
Promoter capture and whole genome in situ Hi-C of human iPSC and iPSC-derived cardiomyocytes from an Yoruban individual (NA19101)
Hi-C
Homo sapiens
12
11/07/2018
ENA
55
-
Gene expression profiling by RNA-seq of human iPSC and iPSC-derived cardiomyocytes from an Yoruban individual (NA19101)
RNA-seq of coding RNA
Homo sapiens
6
11/07/2018
ENA
56
-
RNA libraries of sorted CD8+ memory T cells from the spleen and RNA libraries of sorted IELs from the small intestine of C57BL/6J mice
RNA-seq of coding RNA
Mus musculus
6
10/07/2018
-
ENA
40
-
iPSC-derived macrophages effectively treat pulmonary alveolar proteinosis in Csf2rb-deficient mice
RNA-seq of coding RNA
Mus musculus
10
10/07/2018
ENA
52
-
RNA-seq of human skin lesions diagnosed as actinic keratosis, intraepidermal carcinoma or squamous cell carcinoma
RNA-seq of coding RNA
Homo sapiens
25
09/07/2018
ENA
51
-
Massively parallel single-cell RNA-sequencing of K14E7 transgenic and wildype C57BL/6 mice
RNA-seq of coding RNA from single cells
Mus musculus
4
09/07/2018
ENA
42
-
RNA-seq of metabolically labelled RNA by 4-thiouracil from mouse tissues
RNA-seq of coding RNA
Mus musculus
18
09/07/2018
-
ENA
37
-
Single cell sequencing of lung carcinoma
RNA-seq of coding RNA from single cells
Homo sapiens
19
09/07/2018
-
164
-
SNP array Multi-omics molecular profiling of primary prostate adenocarcinoma
genotyping by array
Homo sapiens
66
09/07/2018
-
41
-
SCRB-seq comparison with TruSeq on bulk RNA-seq human LCL (DMSO) and BAY treated LCL (BAY)
RNA-seq of coding RNA
Homo sapiens
12
07/07/2018
-
ENA
43
-
Single-cell RNA-seq of ex vivo CD45-negative skin resident-cells using microfluidic droplet capture
RNA-seq of coding RNA
Homo sapiens
8
06/07/2018
-
40
-
Bulk RNA-seq of of bone marrow derived mononuclear phagocytes
RNA-seq of coding RNA
Mus musculus, Oryctolagus cuniculus, Rattus norvegicus, Sus scrofa
73
06/07/2018
-
ENA
46
-
Single-cell RNA-seq of dermal fibroblasts stimulated with dsRNA (poly I:C) in a time course of 0, 4 and 8 hours
RNA-seq of coding RNA from single cells
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
240
06/07/2018
ENA
44
-
Single-cell RNA-seq of of dermal fibroblasts using microfluidic droplet capture (stimulated cells)
RNA-seq of coding RNA from single cells
Homo sapiens
2130
06/07/2018
ENA
46
-
Single-cell RNA-seq of of dermal fibroblasts using microfluidic droplet capture (unstimulated cells)
RNA-seq of coding RNA from single cells
Homo sapiens
2553
06/07/2018
ENA
44
-
Single-cell RNA-seq of dermal fibroblasts stimulated with dsRNA (poly I:C) in a time course of 0, 2, 4 and 8 hours
RNA-seq of coding RNA from single cells
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
728
06/07/2018
ENA
42
-
Bulk RNA-seq of dermal fibroblasts after stimulation with interferon or dsRNA (poly I:C)
RNA-seq of coding RNA
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
79
06/07/2018
ENA
38
-
ChIP-seq of H3K4me3 and H3K27ac of dermal fibroblasts with and without dsRNA (poly I:C) stimulation
ChIP-seq
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
52
06/07/2018
ENA
40
-
The effect of high cholesterol diet on expression level of myocardial microRNAs
microRNA profiling by array
Rattus norvegicus
6
06/07/2018
-
34
-
ChIP-Seq of BCL11A and SOX2 in lung squamous cell carcinoma (LUSC) LK-2 cell line with or without BCL11A knockdown
ChIP-seq
Homo sapiens
5
05/07/2018
ENA
53
-
The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice
transcription profiling by array
Mus musculus
12
05/07/2018
-
34
-
RNA-seq experiment of isolated endothelial and microglial cells from hippocampal DG and CA1 regions under control and VEGF overexpression conditions
RNA-seq of coding RNA
Mus musculus
16
04/07/2018
ENA
36
-
Transcriptional response to Rosiglitazone in adipocyte progenitors isolated from WT and Cited4-KO scWAT
transcription profiling by array
Mus musculus
12
04/07/2018
-
35
Transcriptomic profiling of human neuromesodermal-like cells and spinal cord progenitors derived in vitro from H9 ES cell line
RNA-seq of coding RNA
Homo sapiens
6
04/07/2018
ENA
40
-
RNA-seq of primary human M2-polarized macrophages cultured in either high-concentration or low-concentration type I collagen
RNA-seq of coding RNA
Homo sapiens
6
04/07/2018
ENA
52
-
RNAseq of the human gut commensal Bacteroides thetaiotaomicron wildtype, bt0700 and bt0700 bt3998 (ppGpp0) strains across three conditions: glucose minimal medium, 1h of carbon starvation, and mouse gut colonization
RNA-seq of coding RNA
Bacteroides thetaiotaomicron VPI-5482
29
04/07/2018
ENA
43
-
RNA-seq analysis of anti-malarial drug chemotherapy of murine experimental Cerebral Malaria (ECM)
RNA-seq of coding RNA
Mus musculus
39
03/07/2018
-
ENA
39
SNP array profiling of leiomyosarcoma
transcription profiling by array
Homo sapiens
26
02/07/2018
-
40
-
Identification of driver genes in uterine leiomyosarcoma: whole-genome sequencing
DNA-seq
Homo sapiens
4
02/07/2018
-
37
-
Identification of driver genes in uterine leiomyosarcoma: low-coverage WGS
DNA-seq
Homo sapiens
35
02/07/2018
-
ENA
36
-
Identification of driver genes in uterine leiomyosarcoma: RNA seq
RNA-seq of coding RNA
Homo sapiens
30
02/07/2018
-
ENA
39
RNA-seq of Fusarium graminearum under predation by the springtail Folsomia candida against untreated controls
RNA-seq of coding RNA
Fusarium graminearum
8
01/07/2018
-
ENA
44
-
RNA-seq of Streptococcus pyogenes biofilms
RNA-seq of coding RNA
Streptococcus pyogenes
18
01/07/2018
-
ENA
39
-
RNAseq of human bone marrow mesenchymal stem cells in co-culture with endothelial cells
RNA-seq of coding RNA
Homo sapiens
6
01/07/2018
-
ENA
48
-
Meiotic crossover landscape within the RAC1 disease resistance gene
DNA-seq
Arabidopsis thaliana
10
01/07/2018
-
ENA
34
-
Whole-genome shallow-sequencing of HPV-positive and HPV-negative vulvar lesions
DNA-seq
Homo sapiens
86
01/07/2018
ENA
40
-
Transcription profiling of irradiated non-adherent anoikis-resistant DU145 and MCF-7 cells and 5-azacytidine-treated non-adherent anoikis-resistant HeLa cells in contrast to control (non-irradiated, non-treated) cells
transcription profiling by array
Homo sapiens
26
01/07/2018
-
32
-
Development of a small molecule for treatment of castration resistant prostate cancer via androgen receptor and IL6/STAT3 pathways
transcription profiling by array
Homo sapiens
12
01/07/2018
-
35
Microarray of four types of mouse immune samples including those of the spleen (SP), bone marrow (BM), lymph node (LN), and peripheral blood mononuclear cell (PBMC) and three tumor tissues including MC38, EL4 and LLC
transcription profiling by array
Mus musculus
21
30/06/2018
-
42
-
Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions
RNA-seq of coding RNA
Saccharomyces cerevisiae
8
30/06/2018
-
ENA
33
-
DNA methylation in acute sleep loss in humans
transcription profiling by array
Homo sapiens
60
30/06/2018
-
28
-
RNA-seq in acute sleep loss in humans
RNA-seq of coding RNA
Homo sapiens
60
30/06/2018
-
29
-
Transcriptional profiling of blood exposure response gene signature across clinical studies on The Tobacco Heating System 2.2 (THS 2.2) dataset 2
transcription profiling by array
Homo sapiens
378
30/06/2018
30
-
Transcriptional profiling of blood exposure response gene signature across clinical studies on The Tobacco Heating System 2.2 (THS 2.2) dataset 1
transcription profiling by array
Homo sapiens
296
30/06/2018
29
-
RNA-seq comparison of gene expression in enteroids derived of fresh or frozen human intestinal biopsies
RNA-seq of coding RNA
Homo sapiens
129
30/06/2018
-
ENA
39
RNA-seq of Staphylococcus aureus and Staphylococcus aureus challenged with squalene compared to control growth
RNA-seq of coding RNA
Staphylococcus aureus, Staphylococcus epidermidis
12
30/06/2018
ENA
27
-
CXCR3+ Treg cells suppress Th1-immune responses through expression of the co-inhibitory receptors CD85k and Lag-3
RNA-seq of coding RNA
Mus musculus
7
30/06/2018
-
ENA
27
-
Transcription profiling by array of the effect of rapamycin on Anopheles gambiae strains 2La or 2L+
transcription profiling by array
Anopheles gambiae
6
30/06/2018
-
26
-
Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing
RNA-seq of coding RNA
Aedes albopictus, Chlorocebus sabaeus
10
30/06/2018
-
ENA
29
-
ChIP-Seq (H3K4me3, H3K27me3) of steady-state splenic classical dendritic cells from wild type, germ-free and IFNAR knockout mice
ChIP-seq
Mus musculus
18
30/06/2018
-
ENA
25
-
RNA-Seq of steady-state and LPS stimulated splenic classical dendritic cells from wild type, germ-free and IFNAR knockout mice
RNA-seq of coding RNA
Mus musculus
12
30/06/2018
-
ENA
26
-
Mutation in familial platelet disorder with predisposition to myeloid malignancies
DNA-seq
Homo sapiens
1
29/06/2018
-
ENA
30
-
RNA-seq of Candida intermedia growing in different media
RNA-seq of coding RNA
[Candida] intermedia
41
29/06/2018
-
ENA
25
-
RNA-seq of mouse crypts to investigate Rorc gamma t-deficient mice tissue repair compared to wild type controls
RNA-seq of coding RNA
Mus musculus
24
29/06/2018
-
ENA
25
-
Transcriptome profiling of Sinorhizobium meliloti Rm1021 grown in semisolid media (MM) in presence of 2-tridecanone (2-TDC)
transcription profiling by array
Sinorhizobium meliloti
3
29/06/2018
-
25
-
Gene expression profile of microdissected mucinous cystic neoplasms of the pancreas
transcription profiling by array
Homo sapiens
6
28/06/2018
-
27
-
Gene-expression profile of human embryonic germ cells
transcription profiling by array
Homo sapiens
11
28/06/2018
-
34
-
Gene expression profile of microdissected mucinous ovarian tumors
transcription profiling by array
Homo sapiens
17
28/06/2018
-
27
-
Anopheles coluzzii small RNAseq
RNA-seq of non coding RNA
Anopheles coluzzii
16
28/06/2018
-
ENA
26
-
Anopheles coluzzii RNAseq
RNA-seq of coding RNA
Anopheles coluzzii
16
28/06/2018
-
ENA
30
-
Molecular Profiling of Chemoresistant Slow Cycling Cancer-Initiating Cells from human colorectal cancer, glioma and melanoma
transcription profiling by array
Homo sapiens
79
28/06/2018
38
-
Mapping hnRNP H binding sites on RON wildtype minigene and RON mutant minigenes via iCLIP
CLIP-seq
Homo sapiens
10
27/06/2018
-
ENA
31
-
Mapping hnRNP H binding sites on the RON wildtype minigene via iCLIP
CLIP-seq
Homo sapiens
2
27/06/2018
-
ENA
31
-
DNA-seq of a library of mutated minigene reporters
DNA-seq
Homo sapiens
2
27/06/2018
-
ENA
30
-
RNA-seq of the spliced products from a mutated minigene reporter library under control and hnRNP H knockdown conditions in MCF-7 cells
RNA-seq of coding RNA
Homo sapiens
6
27/06/2018
-
ENA
33
-
RNA-seq of the spliced products from a mutated minigene reporter library in HEK293T cells
RNA-seq of coding RNA
Homo sapiens
3
27/06/2018
-
ENA
33
-
Lotus japonicus response to Nod factor: wild type and nfre mutants
RNA-seq of coding RNA
Lotus japonicus
12
27/06/2018
-
ENA
34
-
RNA-seq of hepatocytes obtained through step-wise differentiation of hIPSCs from a patient with A1AT deficiency and its point mutation-corrected isogenic hIPSC line. Comparison to primary hepatocytes from a healthy donor and an A1AT-deficient patient
RNA-seq of coding RNA
Homo sapiens
8
26/06/2018
-
ENA
28
-
Expression data from draining lymph node and muscle of mice immunised with AS03 or PBS
transcription profiling by array
Mus musculus
35
26/06/2018
-
27
Gene expression profiling of patient-derived glioblastoma stem cell cultures
transcription profiling by array
Homo sapiens
16
26/06/2018
-
43
-
RNA-seq of Bacillus subtilis (i) sigI-rsgI knock-out strain, (ii) rsgI disrupted strain, and (iii) wt strains during growth at 52°C and 37°C
RNA-seq of coding RNA
Bacillus subtilis subsp. subtilis str. 168
18
26/06/2018
-
ENA
44
-
RNA-Seq of RAW 264.7 cells stimulated with the AS03 adjuvant after 4 and 8 hours
RNA-seq of coding RNA
Mus musculus
48
26/06/2018
ENA
39
Single-cell RNA-seq data of mammary gland epithelial cells from different gestational stages to detect and remove barcode swapping
RNA-seq of coding RNA from single cells
Mus musculus
160
25/06/2018
ENA
35
-
ChIP-seq analysis of bZIP73 binding sites in rice seedlings (Zhonghua11)
ChIP-seq
Oryza sativa Japonica Group
4
25/06/2018
-
ENA
30
-
NAT10 inhibition improves cellular phenotypes of Hutchinson-Gilford progeria syndrome by restoring the Transportin-1 pathway
transcription profiling by array
Homo sapiens
36
25/06/2018
-
27
-
Single-cell RNA sequencing of OT-I CD8+ T cells after stimulation with different affinity ligands
RNA-seq of coding RNA
Mus musculus
952
25/06/2018
ENA
63
-
ChIP-seq for Prep on whole zebrafish embryos at 3.5 and 12hpf
ChIP-seq
Danio rerio
8
25/06/2018
ENA
31
-
Foxp3+ regulatory T cells control psoriasiform skin inflammation by restraining a type 1 interferon driven CD8+ T cell response
transcription profiling by array
Mus musculus
18
24/06/2018
-
37
-
Transcriptomic analysis of the developing cerebellum in a mouse model for SRD5A3-CDG
transcription profiling by array
Mus musculus
8
24/06/2018
-
36
-
Methylation array for Multi-omics molecular profiling of primary prostate adenocarcinoma
methylation profiling by array
Homo sapiens
390
24/06/2018
36
-
Expression array for Multi-omics molecular profiling of primary prostate adenocarcinoma
transcription profiling by array
Homo sapiens
141
24/06/2018
-
30
-
SNP array for Multi-omics molecular profiling of primary prostate adenocarcinoma
genotyping by array
Homo sapiens
132
24/06/2018
-
33
-
Genome-wide maps of nuclear lamina interactions in HeLa cells identified using MethylAdenine IDentification (MadID)
MeDIP-seq
Homo sapiens
3
22/06/2018
ENA
36
-
Gene expression profiles of human breast cancer cell lines MCF-7, T47D and MDA-MB-231 co-cultured with 3T3-L1 adipocytes
transcription profiling by array
Homo sapiens
18
22/06/2018
50
-
Single cell RNA-sequencing of PBMC derived B cells from human healthy donor
RNA-seq of coding RNA from single cells
Homo sapiens
117
22/06/2018
-
ENA
67
-
RNA-Seq of murine lung tissue and blood treated with S. pneumoniae TIGR4 or S. aureus USA300 against PBS controls
RNA-seq of coding RNA
Mus musculus
36
22/06/2018
-
ENA
37
-
Single cell RNA-sequencing of T cells to examine barcode swapping
RNA-seq of coding RNA from single cells
Mus musculus
960
21/06/2018
ENA
62
-
RNA-seq of cultured parasites supplemented with sodium L-lactate
RNA-seq of coding RNA
Plasmodium falciparum 3D7
9
20/06/2018
-
ENA
52
-
Dual RNA-seq of peripheral blood from Gambian children with severe or uncomplicated Plasmodium falciparum malaria
RNA-seq of coding RNA
Homo sapiens
53
20/06/2018
-
ENA
47
-
microRNA array on plasma from two diffuse large B-cell lymphoma patients and one healthy donor
microRNA profiling by array
Homo sapiens
9
20/06/2018
33
-
TAP RNA-IP - MKT1
RNA-seq of coding RNA
Trypanosoma brucei
4
18/06/2018
-
ENA
44
-
TAP RNA-IP - ZC3H22
RNA-seq of coding RNA
Trypanosoma brucei
4
18/06/2018
-
ENA
44
-
TAP RNA-IP - MKT1L
RNA-seq of coding RNA
Trypanosoma brucei
4
18/06/2018
-
ENA
47
-
Whole transcriptome analysis of rat peritoneal cells in a TGFβ1 induced mesothelial-to-mesenchymal transition
RNA-seq of coding RNA
Rattus norvegicus
10
18/06/2018
-
ENA
44
RNA-seq of blood taken from patients suffering from sleeping sickness and infected with Trypanosoma brucei rhodesiense
RNA-seq of coding RNA
Homo sapiens
9
18/06/2018
-
ENA
51
-
Single-cell RNA-seq of de-differentiated mammary adipocytes during lactation
RNA-seq of coding RNA from single cells
Mus musculus
79
17/06/2018
ENA
47
-
ChIP-seq of Mycobacterium smegmatis PafBC to identify in vivo binding sites
ChIP-seq
Mycobacterium smegmatis str. MC2 155
16
17/06/2018
ENA
48
-
RNA-seq of Mycobacterium smegmatis mc2-155 SMR5 wild-type vs. a pafBC deletion strain under different growth/stress conditions
RNA-seq of coding RNA
Mycobacterium smegmatis str. MC2 155
12
17/06/2018
ENA
55
-
modified iCLIP experiment with the addition of a 5'marker to identify read-through reads
CLIP-seq
Homo sapiens
6
15/06/2018
-
ENA
54
-
RNA-seq of mouse wildtype HSCs purified from recipient mice co-transplanted with wildtype or different types of lymphoid cell deficient HSCs
RNA-seq of coding RNA
Mus musculus
11
14/06/2018
-
ENA
48
-
RNA-seq of wild-type and Tbx20 homozygous knockout E11.5 mouse cardiomyocytes to study Tbx20's roles in embryonic and adult mouse heart function
RNA-seq of coding RNA
Mus musculus
8
14/06/2018
-
ENA
74
-
RNA-seq across tissues in four Notothenioid species (Antarctic icefish)
RNA-seq of coding RNA
Harpagifer antarcticus, Neopagetopsis ionah, Parachaenichthys charcoti, Pseudochaenichthys georgianus
58
13/06/2018
-
ENA
54
-
RNA-seq of Myd88 cKO fibroblast reticular cells in mouse omentum on exposure to Salmonella typhi OmpC/F to investigate adaptive immunity
RNA-seq of coding RNA
Mus musculus
13
12/06/2018
-
ENA
63
-
Cell-of-origin epigenetic signatures are maintained during colorectal carcinogenesis
methylation profiling by array
Homo sapiens
146
12/06/2018
-
65
-
RNA-Seq on Malus domestica Braeburn x Cameo lines resistant and susceptible to bitter pit disorder
RNA-seq of coding RNA
Malus domestica
4
12/06/2018
-
ENA
55
-
Methylation arrays delineate the extent of 5mC and 5hmC in human brain and glioma samples
methylation profiling by array
Homo sapiens
56
12/06/2018
-
56
-
RNA-seq analysis of several in vitro models of hepatocyte function: Project 4 of Open Targets - Epigenomes of Cell Lines
RNA-seq of coding RNA
Homo sapiens
18
11/06/2018
-
ENA
62
-
RNA-seq analysis of two common T cell models, HUT78 and JURKAT E6.1: Project 5 of Open Targets - Epigenomes of Cell Lines
RNA-seq of coding RNA
Homo sapiens
8
11/06/2018
-
ENA
54
-
RNA-seq analysis of several immortalized B cell lines (Namalwa, Daudi, Ramos, Raji, Toledo, ARH-77): Project 6 of Open Targets - Epigenomes of Cell Lines
RNA-seq of coding RNA
Homo sapiens
12
11/06/2018
-
ENA
47
-
Microarray analyses of mouse dorsal root ganglia tissue for six different pain models
transcription profiling by array
Mus musculus
47
11/06/2018
-
52
-
Transcriptional analysis of differential immune and inflammatory responses to Sarcoptes scabiei infestation in a porcine model
transcription profiling by array
Sus scrofa
60
11/06/2018
-
55
-
Transcription profiling by array of CD4+ T cell or CD14 positive monocyte lysates or whole blood samples taken from kidney transplant recipients treated with or without Belimumab
transcription profiling by array
Homo sapiens
171
11/06/2018
-
47
-
ChIP-seq experiment to determine the genomic binding sites of mutant V5-tagged ZFHX2 R1913K protein in a stable-expressing human SH-SY5Y neuroblastoma cell line
ChIP-seq
Homo sapiens
3
11/06/2018
-
ENA
48
-
Microarray of BAC transgenic Zfhx2 p.R1907K mutant mice (4 genomic copies) versus wild-types
transcription profiling by array
Mus musculus
12
11/06/2018
-
45
-
Sequencing 5-hydroxymethyluracil via chemical modification and mismatch formation
DNA-seq
synthetic construct
42
08/06/2018
-
ENA
84
-
Methylation arrays (MethylationEPIC) reveal specific DNA hypermethylation of T cells during human hematopoietic differentiation
methylation profiling by array
Homo sapiens
10
08/06/2018
54
-
Microarray analysis of transcription changes in zebrafish embryos of different developmental ages after exposure to cyanide
transcription profiling by array
Danio rerio
12
08/06/2018
59
-
ATAC-seq of HEK293 cells with Alu-motif targeted dCas9GFP
ATAC-seq
Homo sapiens
9
07/06/2018
-
ENA
58
-
DNA methylome analysis of human pluripotent stem cells reprogrammed with CRISPRa
methylation profiling by array
Homo sapiens
64
07/06/2018
-
61
-
STRT RNAseq of human foreskin fibroblasts undergoing CRISPRa reprogramming
RNA-seq of coding RNA
Homo sapiens
44
07/06/2018
-
ENA
52
-
STRT RNAseq of pluripotent stem cells reprogrammed with CRISPRa
RNA-seq of coding RNA
Homo sapiens
26
07/06/2018
-
ENA
60
-
Possible role of Adrenomedullin and PLAUR in Hereditary Angioedema attacks: a transcriptomic analysis
transcription profiling by array
Homo sapiens
25
07/06/2018
-
44
-
Microarray on wild-type and mutant Hesx1 embryonic stem (ES) cells cultured in serum/LIF
transcription profiling by array
Mus musculus
3
07/06/2018
-
43
-
TMC-SNPdb: An Indian germline variant dataset derived from whole exome sequence
DNA-seq
Homo sapiens
62
06/06/2018
-
ENA
47
-
Transcription profiling by array to investigate psoriasis risk and non-risk isoforms of CCHCR1 in HEK293 cells
transcription profiling by array
Homo sapiens
15
04/06/2018
69
Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair
DNA-seq
Homo sapiens, Mus musculus
105
04/06/2018
-
ENA
59
-
Time series RNAseq of apical tissues along 4 developmental stages of development (I-III : vegetative stage; IV: sexually mature) in Mercurialis annua
RNA-seq of coding RNA
Mercurialis annua
24
04/06/2018
-
ENA
52
-
RNASeq of mature leaf and root tissues, before and after flowering, in Mercurialis annua
RNA-seq of coding RNA
Mercurialis annua
40
04/06/2018
-
ENA
46
-
RNA-Seq of BW25113 Escherichia coli (wild-type and a mutant lacking yeaG) experiencing initial and sustained nitrogen starvation in Gutnick minimal media
RNA-seq of coding RNA
Escherichia coli K-12
14
04/06/2018
-
ENA
56
-
Genomic sequencing of T. brucei cell lines resistant to AN7973
DNA-seq
Trypanosoma brucei brucei
5
04/06/2018
ENA
47
-
Profiling of mRNA expression in irritable bowel syndrome vs healthy controls
transcription profiling by array
Homo sapiens
30
03/06/2018
65
-
Transcription profiling by array of wild type pea seeds and seeds with embryo-specific expression of a bacterial trehalose 6-phosphate phosphatase (TPP), encoded by the otsB gene to investigate the influence of decreased T6P content on gene expression in developing cotyledons
transcription profiling by array
Pisum sativum
23
01/06/2018
63
-
RNA-seq of primary murine (C57BL/6J) LSK cells overexpressing miR-10a or miR-335
RNA-seq of coding RNA
Mus musculus
9
01/06/2018
-
ENA
54
-
RNA-seq to investigate impact of treatment of KRAS mutant NCI-H2009 lung adenocarcinoma cells with the multi-ERBB inhibitor Neratinib
RNA-seq of coding RNA
Homo sapiens
6
01/06/2018
-
ENA
61
RNA-seq to investigate impact of treatment of KRAS mutant NCI-H358 lung adenocarcinoma cells with the multi-ERBB inhibitor Neratinib
RNA-seq of coding RNA
Homo sapiens
6
01/06/2018
-
ENA
60
RNA-seq to investigate impact of treatment of KRAS mutant A549 lung adenocarcinoma cells with the multi-ERBB inhibitor Neratinib
RNA-seq of coding RNA
Homo sapiens
6
01/06/2018
-
ENA
53
RBM7 activates P-TEFb for a pro-survival transcriptional response to DNA damage
CLIP-seq
Homo sapiens
6
01/06/2018
-
ENA
56
-
Progression of KRas^G12D;Rosa26-MYC tumours to invasive disease
RNA-seq of coding RNA
Mus musculus
8
01/06/2018
-
ENA
49
-
Transcriptome profiling of wild type, K159/298Q- and K159/298R- C/EBPα expressing mouse cells
RNA-seq of coding RNA
Mus musculus
9
01/06/2018
-
ENA
58
-
Transcription profiling by array of fetal RNA from amniotic fluid of twin-to-twin syndrome pregnancies compared to control single pregnancies
transcription profiling by array
Homo sapiens
32
01/06/2018
-
44
-
RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
RNA-seq of coding RNA
Triticum aestivum
12
01/06/2018
-
ENA
52
RNA-seq analysis of EpiSCs undergoing differentiation induced by EB formation
RNA-seq of coding RNA
Mus musculus
6
01/06/2018
ENA
54
-
ChIP-seq analysis of Esrrb, Nanog, Oct4, and Sox2 in EpiSCs undergoing reprogramming
ChIP-seq
Mus musculus
25
01/06/2018
ENA
103
-
Microarray analysis of EpiSCs undergoing reprogramming by Esrrb
transcription profiling by array
Mus musculus
34
01/06/2018
-
49
-
Differentiating liposarcoma from lipoma using a simple blood test: A miRNA signature
transcription profiling by array
Homo sapiens
10
01/06/2018
-
50
-
Nucleosome occupancy during NuRD complex induction
MNase-seq
Mus musculus
9
31/05/2018
-
ENA
44
-
Transcription profiling by RNA-seq during NuRD complex induction in mouse embryonic stem cells
RNA-seq of coding RNA
Mus musculus
24
31/05/2018
-
ENA
42
RNA-seq profiling of nascent transcription during NuRD complex induction in mouse embryonic stem cells
RNA-seq of coding RNA
Mus musculus
18
31/05/2018
-
ENA
38
-
Transcription factor binding and epigenetic modifications during NuRD complex induction
ChIP-seq
Mus musculus
126
31/05/2018
-
ENA
130
-
ChIP-seq of CIC (Capicua) and histone marks (H3K9ac, H3K27ac and H3K4me1) in glioma neural stem cells (GNS) G144, human foetal neural stem cells (hNSC) and mouse embryonic stem cells (mESC),
ChIP-seq
Homo sapiens, Mus musculus
33
31/05/2018
ENA
110
-
RNA-seq of Glioma Neural Stem (GNS) cell line G144 after MEK inhibition in wild type (WT) and CIC (Capicua) depleted cells
RNA-seq of coding RNA
Homo sapiens
27
31/05/2018
-
ENA
54
Transcription profiling by array of pulmonary gene expression in response to interleukin-22 during severe influenza
transcription profiling by array
Mus musculus
19
31/05/2018
-
32
Identification of target genes of Cud-type transcription factor, spaA, in a Dictyostelid social amoebae by ChIP-seq
ChIP-seq
Dictyostelium discoideum
6
31/05/2018
-
ENA
49
-
Whole Transcriptome sequencing TSCC (tongue squamous cell carcinoma)
RNA-seq of coding RNA
Homo sapiens
15
31/05/2018
-
ENA
49
-
Whole exome sequencing of TSCC (tongue squamous cell carcinoma)
DNA-seq
Homo sapiens
24
31/05/2018
-
ENA
35
-
scRNA-seq of mouse subcutaneous Lin- SVF cells
RNA-seq of coding RNA from single cells
Mus musculus
1
30/05/2018
-
59
-
Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes
transcription profiling by array
Arabidopsis thaliana
12
29/05/2018
-
74
Hypothalamic DNA-methylation differences in Red Junglefowl divergently selected for reduced fear of humans
MeDIP-seq
Gallus gallus
12
29/05/2018
-
ENA
34
-
RNA-seq of PDAC tissues grown as patient-derived tumor xenografts
RNA-seq of coding RNA
Homo sapiens
24
29/05/2018
-
ENA
67
-
ChIP-seq of PDAC tissues grown as patient-derived tumor xenografts
ChIP-seq
Homo sapiens
144
29/05/2018
-
ENA
127
-
RNA-seq of mutant Mycobacterium neoaurum producing steroid intermediates compared with wild-type strain
RNA-seq of coding RNA
Mycobacterium neoaurum
5
26/05/2018
-
ENA
46
-
RNA-seq of an adult Porites rus colony derived from Indonesia
RNA-seq of coding RNA
Porites rus
1
25/05/2018
-
ENA
59
-
RNA-Seq of 293T cells depleted of U2AF-related proteins
RNA-seq of coding RNA
Homo sapiens
6
25/05/2018
-
ENA
86
-
Copy number variants analysis of heterotaxy syndrome patients with congenital heart defects
genotyping by array
Homo sapiens
63
24/05/2018
-
44
-
Monocyte-derived IL-1 and IL-6 are differentially required for cytokine release syndrome and neurotoxicity by CAR-T cells
RNA-seq of coding RNA from single cells
Homo sapiens
4
24/05/2018
-
-
91
-
RNAseq of whole ovarian follicles from young and old mice
RNA-seq of coding RNA
Mus musculus
48
22/05/2018
-
ENA
51
-
Microarray of formalin-fixed, paraffin-embedded uninvolved terminal ileal tissue obtained from ileo-colic resection surgeries of Crohn’s disease and control patients
transcription profiling by array
Homo sapiens
136
22/05/2018
-
81
-
RNA-seq of formalin-fixed, paraffin-embedded uninvolved terminal ileal tissue obtained from ileo-colic resection surgeries of Crohns disease and control patients
RNA-seq of coding RNA
Homo sapiens
68
22/05/2018
ENA
92
RNA-seq on Hesx1+/+ and Hesx1-/- ES cells deprived of 2i/LIF for 24 hours
RNA-seq of coding RNA
Mus musculus
5
21/05/2018
-
ENA
53
-
PUF2 and UBP1 RNAi and pull-down in Trypanosoma brucei
RNA-seq of coding RNA
Trypanosoma brucei
6
21/05/2018
-
ENA
49
-
MIRNA - Integrative multi-omics survey of effects carbon-based engineered nanomaterials on lung derived cell-lines
transcription profiling by array
Homo sapiens
91
19/05/2018
95
-
DNA-METHYLATION - Integrative multi-omics survey of effects carbon-based engineered nanomaterials on lung derived cell-lines
transcription profiling by array
Homo sapiens
198
19/05/2018
88
-
MRNA-Integrative multi-omics survey of effects carbon-based engineered nanomaterials on lung derived cell-lines
transcription profiling by array
Homo sapiens
64
19/05/2018
107
-
Regulation of total and polysomal RNA expression in rat neonatal cardiac myocytes by H2O2
transcription profiling by array
Rattus norvegicus
16
17/05/2018
-
79
Haploid genetic screen for components of MLKL-mediated cell death
DNA-seq
Homo sapiens
2
16/05/2018
-
ENA
106
-
RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
RNA-seq of coding RNA
Arabidopsis thaliana
9
16/05/2018
-
ENA
115
-
RNA-Seq of human aortic endothelial cells with lysophosphatidylinositol against untreated controls
RNA-seq of coding RNA
Homo sapiens
6
16/05/2018
-
ENA
100
-
RNA-Seq of human aortic endothelial cells with lysophosphatidylcholine against untreated controls
RNA-seq of coding RNA
Homo sapiens
2
16/05/2018
-
ENA
83
-
Microarray transcription profiling of healthy and PVYNTN infected potato tuber tissues (necrotic and non-necrotic)
transcription profiling by array
Solanum tuberosum
16
16/05/2018
68
-
Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain
RNA-seq of coding RNA
Equus caballus
10
15/05/2018
-
ENA
63
-
Transcriptome analysis of khd-1, spen-1 and hub1-4 Arabidopsis mutants
RNA-seq of coding RNA
Arabidopsis thaliana
12
14/05/2018
ENA
103
BCL-2 levels do not predict azathioprine treatment response in inflammatory bowel disease, but inhibition induces lymphocyte apoptosis and ameliorates colitis in mice
RNA-seq of coding RNA
Homo sapiens
6
14/05/2018
ENA
99
-
Identification of the Tetracycline dependent genes in Salmonella enterica serovar Typhimurium SL1344 (R27)
transcription profiling by array
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
6
14/05/2018
-
61
-
RNA-seq of the anterior third (head) region of fifty pooled danio rerio embryos at the 15-somite stage following crispld2 morpholino knockdown compared to uninjected controls
RNA-seq of coding RNA
Danio rerio
2
13/05/2018
ENA
60
-
RNA-seq of myocytes from mice treated in vivo for 3 days with vehicle, angiotensin II, or phenylephrine
RNA-seq of coding RNA
Mus musculus
14
12/05/2018
ENA
73
Whole-genome methylation analysis (450k) of school aged children prenatally exposed to alcohol vs controls
methylation profiling by array
Homo sapiens
358
12/05/2018
91
-
Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
RNA-seq of coding RNA
Arabidopsis thaliana
24
12/05/2018
-
ENA
77
Illumina Infinium HumanMethylation450 BeadChip profiling of paediatric high grade gliomas from the HERBY clinical trial
methylation profiling by array
Homo sapiens
164
11/05/2018
-
111
-
Variation in RNA expression in a panel of 30 breast cancer cell lines
RNA-seq of coding RNA
Homo sapiens
30
11/05/2018
ENA
238
-
Expression profiling of mouse CD4+ T cells following Klf1 retrovirus vector transfection
RNA-seq of coding RNA
Mus musculus
12
10/05/2018
-
ENA
59
-
RNA-Seq of seed dormancy in red rice
RNA-seq of coding RNA
Oryza sativa
18
10/05/2018
-
ENA
143
-
Effects on adult testis of Sertoli cell-specific ablation of miR-17-92 in mouse embryos
RNA-seq of coding RNA
Mus musculus
6
10/05/2018
-
ENA
52
Transcription profiling by array of 60 pre-chemotherapy FFPE endoscopic oesophageal adenocarcinoma biopsies
transcription profiling by array
Homo sapiens
63
10/05/2018
-
73
-
Transcriptional profiling of human bronchial epithelial cell BEAS-2B exposed to diesel and biomass ultrafine particles
RNA-seq of coding RNA
Homo sapiens
45
09/05/2018
ENA
120
Microarray and transcript expression analysis of P. aeruginosa grown with or without bacterial (Exiguobacterium indicum SJ16) extracts
transcription profiling by array
Pseudomonas aeruginosa PAO1
2
08/05/2018
-
25
-
Gene expression data from 10 untreated human colon cancer cell lines
transcription profiling by array
Homo sapiens
20
08/05/2018
141
-
Single-cell RNA-seq of murine medullary thymic epithelial cells (mTECs)
RNA-seq of coding RNA from single cells
Mus musculus
164
08/05/2018
ENA
82
-
Thioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis
RNA-seq of coding RNA
Arabidopsis thaliana
6
06/05/2018
ENA
86
The expression profiles of miRNAs in H. pylori infected esophageal cells were analyzed by microarray
microRNA profiling by array
Homo sapiens
4
05/05/2018
-
85
-
RNA-seq of peri-infarct cortex of the rat dMCAO model of ischemic stroke treated with AAV7-hMANF or AAV7-GFP
RNA-seq of coding RNA
Rattus norvegicus
10
04/05/2018
-
ENA
96
RNA-seq of human ovarian adenocarcinoma cell line SKOV3 treated with bisphenol A (10 or 100 nM) against untreated controls
RNA-seq of coding RNA
Homo sapiens
9
04/05/2018
-
ENA
132
-
RNA-seq of HeLa-MZ cells treated with Wnt3a conditioned media for 0, 2 and 6 hours
RNA-seq of coding RNA
Homo sapiens
29
01/05/2018
-
ENA
129
-
RNA-seq to investigate differentially expressed genes in KPC mouse PDAC treated with CSF-1R small molecule inhibitor AZD7507 and/or the CXCR2 small molecule inhibitor AZD5069
RNA-seq of coding RNA
Mus musculus
58
01/05/2018
-
ENA
202
-
Transcriptome 3' end profiling by high throughput sequencing of HeLa cells depleted of MATR3, PTBP1/2 individually or in combination
RNA-seq of coding RNA
Homo sapiens
20
01/05/2018
-
ENA
75
-
4SU-iCLIP of PTBP1 from HEK293 cells with or without MATR3 depletion
RNA-seq of coding RNA
Homo sapiens
4
01/05/2018
-
ENA
62
-
iCLIP of MATR3 from C57BL/6J wildtype mice
CLIP-seq
Mus musculus
7
01/05/2018
-
ENA
61
-
Transciptome time course of Arabidopsis stigma senescence
RNA-seq of coding RNA
Arabidopsis thaliana
9
01/05/2018
-
ENA
84
-
4SU-iCLIP of MATR3 from HEK293 cells with or without PTBP1 depletion
CLIP-seq
Homo sapiens
3
01/05/2018
-
ENA
63
-
Transcriptome profiling by high throughput sequencing of HeLa cells depleted of MATR3, PTBP1/2 individually or in combination by siRNA
RNA-seq of coding RNA
Homo sapiens
36
01/05/2018
-
ENA
103
-
Transcriptional profiling of tfap2a;tfap2c loss of function in zebrafish single whole embryos at 15 somites post fertilisation
RNA-seq of coding RNA
Danio rerio
360
01/05/2018
ENA
70
RNA-seq to investigate host response in resistant versus susceptible breeds of Gallus gallus to Newcastle disease virus challenge in the Harderian gland transcriptome
RNA-seq of coding RNA
Gallus gallus
94
01/05/2018
-
ENA
63
-
Atp4b-Cre;Cdh1(fl/fl);Kras(LSL-G12D/+);Trp53(fl/fl);Rosa26(LSL-YFP/LSL-YFP) mouse stomach vs. Atp4b-Cre;Cdh1(fl/+);Kras(LSL-G12D/+);Trp53(fl/fl);Rosa26(LSL-YFP/LSL-YFP) mouse stomach microarray
transcription profiling by array
Mus musculus
8
01/05/2018
118
-
RNA-seq of mouse adipose stem and progenitor cells
RNA-seq of coding RNA
Mus musculus
10
01/05/2018
ENA
117
-
scRNA-seq of mouse adipose stem and progenitor cells
RNA-seq of coding RNA from single cells
Mus musculus
288
01/05/2018
ENA
150
-
3' RNA-seq of CD142+/- mouse adipose stem and progenitor cells
RNA-seq of coding RNA
Mus musculus
50
01/05/2018
ENA
79
-
3' RNA-seq of CD142+/- human adipose stem and progenitor cells
RNA-seq of coding RNA
Homo sapiens
12
01/05/2018
ENA
74
-
Comparative transcriptome analysis of a lowly virulent strain of Erwinia amylovora in shoots of two apple cultivars susceptible and resistant to fire blight
RNA-seq of coding RNA
Erwinia amylovora
30
01/05/2018
-
ENA
52
-
RNA-seq of barley lines after dehydration, spider mite or combined stress
RNA-seq of coding RNA
Hordeum vulgare subsp. vulgare
12
30/04/2018
-
ENA
62
-
ChIP-seq of IDS1-myc using Oryza sativa seedlings
ChIP-seq
Oryza sativa Japonica Group
4
30/04/2018
ENA
333
-
DNA methylation profiling of BEAS-2B cells exposed to low doses of Ag nanoparticles for 6 weeks
methylation profiling by array
Homo sapiens
6
30/04/2018
-
46
-
RNA-Seq of BEAS-2B cells treated with low doses of Ag nanoparticles for 6 weeks
RNA-seq of coding RNA
Homo sapiens
13
30/04/2018
ENA
51
-
Examination of tumor samples obtained after laparoscopic supracervical hysterectomy and a derivative leiomyosarcoma
comparative genomic hybridization by array
Homo sapiens
10
30/04/2018
-
64
-
Transcriptional response of Pseudomonas aeruginosa PAO1 to NaClO
transcription profiling by array
Pseudomonas aeruginosa PAO1
4
30/04/2018
-
64
-
Identification of transcript dysregulation in rats with a neuropathic pain, treated or not with vitamin D
transcription profiling by array
Rattus norvegicus
6
29/04/2018
-
25
-
RNA-seq of Pseudomonas aeruginosa PAO1 planktonic and biofilm cells treated with coumarin
RNA-seq of coding RNA
Pseudomonas aeruginosa PAO1
12
29/04/2018
-
ENA
74
-
Genetic Engineering of indica Rice with AtDREB1A Gene for enhanced Abiotic Stress Tolerance
transcription profiling by array
Oryza sativa Indica Group
8
29/04/2018
-
66
-
Ultra-deep sequencing of plasma DNA identifies druggable mutations in hepatocellular carcinoma
genotyping by high throughput sequencing
Homo sapiens
40
29/04/2018
-
ENA
79
-
Gene expression profile in human monocytes treated with IgG from APS patients or IgG from controls
transcription profiling by array
Homo sapiens
22
28/04/2018
-
68
-
Identification of cis-eQTLs in six immune cell types CD4, CD8, CD14,CD15, CD19, PLA and ileal, colonic and rectal biopsies in 323 healthy European individuals (CEDAR cohort)
transcription profiling by array
Homo sapiens
2967
28/04/2018
-
143
-
Genotyping of 323 healthy Europeans blood samples (CEDAR cohort) for cis-eQTL analysis in 6 immune cell types and ileal, colonic and rectal biopsies
genotyping by array
Homo sapiens
692
28/04/2018
-
66
-
Transcriptome profiling during interactions between food-spoilage-associated lactic acid bacteria: Leuconostoc gelidum, Lactococcus piscium and Lactobacillus oligofermentans
RNA-seq of coding RNA
Lactobacillus oligofermentans LMG 22743T, Lactobacillus oligofermentans LMG 22743T + Lactococcus piscium MKFS47, Lactobacillus oligofermentans LMG 22743T + Lactococcus piscium MKFS47 + Leuconostoc gelidum subsp. gasicomitatum LMG 18811T, Lactococcus piscium MKFS47, Lactococcus piscium MKFS47 + Leuconostoc gelidum subsp. gasicomitatum LMG 18811T, Leuconostoc gelidum subsp. gasicomitatum LMG 18811T, Leuconostoc gelidum subsp. gasicomitatum LMG 18811T + Lactobacillus oligofermentans LMG 22743T
71
27/04/2018
-
ENA
58
-
RNAseq of old and young Macrotermes bellicosus (Blattodea, Isoptera) individuals
RNA-seq of coding RNA
Macrotermes bellicosus
36
26/04/2018
-
ENA
75
-
Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
transcription profiling by array
Arabidopsis thaliana
30
26/04/2018
-
76
Ampliseq transcriptomic array of REF seq. genes in Snai1 knock out triple negative breast cancer cells
RNA-seq of coding RNA
Homo sapiens
6
25/04/2018
-
ENA
117
-
Ampliseq transcriptomic array of REF seq. genes in ZEB1 knock out triple negative breast cancer cells
RNA-seq of coding RNA
Homo sapiens
6
25/04/2018
-
ENA
87
-
ChIP-sequencing of Snai1 transcription factor in triple negative breast cancer cell line Hs578T
ChIP-seq
Homo sapiens
4
25/04/2018
-
ENA
87
-
ChIP-sequencing of ZEB1 in triple negative breast cancer cell line Hs578T
ChIP-seq
Homo sapiens
4
25/04/2018
-
ENA
90
-
Transcription profiling of human primary bone cells exposed to Staphylococcus aureus
transcription profiling by array
Homo sapiens
6
24/04/2018
-
77
Jak kinase inhibition in mouse adipocyte progenitors
transcription profiling by array
Mus musculus
12
24/04/2018
-
52
-
Microarray of ZEB1 Loss-of-Function in NCH421K cells
transcription profiling by array
Homo sapiens
6
24/04/2018
73
-
ChIP-seq for Zeb1 in Human Neural Stem Cells and Glioblastoma Cancer Stem-like Cells
ChIP-seq
Homo sapiens
2
24/04/2018
ENA
79
-
Transcription profiling by array to investigate gene expression changes caused by TNF-alpha induced fusion of human M13SV1-Cre breast epithelial cells and MDA-MB-435-pFDR1 breast cancer cells during normoxia and hypoxia
transcription profiling by array
Homo sapiens
8
23/04/2018
-
78
-
Transcriptional Profiling of Synovium in a Porcine Model of Early Post-traumatic Osteoarthritis
RNA-seq of coding RNA
Sus scrofa
42
21/04/2018
-
ENA
81
-
Biochemical Efficacy and Safety Trial of Vitamin D: dose-finding, placebo-controlled, randomised clinical trial assessing effects of high dose vitamin D
transcription profiling by array
Homo sapiens
574
21/04/2018
73
-
RNA sequencing of chicken limb distal mesenchyme cells to compare gene expression over time and in heterochronic grafted cells
RNA-seq of coding RNA
Gallus gallus
12
20/04/2018
ENA
78
-
Single cell RNA-seq of isolated human foetal L/M-opsin cone photoreceptor populations labelled using the AAV2/9.pR2.1.GFP reporter
RNA-seq of coding RNA from single cells
Homo sapiens
295
20/04/2018
-
ENA
127
-
RNA-seq of isolated human foetal and hiPSC L/M-opsin cone photoreceptor populations labelled using the AAV2/9.pR2.1.GFP reporter
RNA-seq of coding RNA
Homo sapiens
95
20/04/2018
-
ENA
134
-
Morphine treatment leads to temporal modulation of the gut microbiome
DNA-seq
mouse gut metagenome
64
16/04/2018
-
ENA
92
-
Morphine treatment induces distinct changes in the gut microbiome at day 3 post treatment
DNA-seq
mouse gut metagenome
16
16/04/2018
-
ENA
71
-
Microarray analysis of human pediatric omental biopsies obtained from uremic patients, patients on peritoneal dialysis or healthy controls
transcription profiling by array
Homo sapiens
19
12/04/2018
-
148
-
Genome-wide profiling of H3K27ac (ChIP-seq) in IMR90 cells
ChIP-seq
Homo sapiens
4
12/04/2018
ENA
92
-
Genome-wide profiling of CTCF binding (ChIP-seq) in A549 and U2OS cells
ChIP-seq
Homo sapiens
4
12/04/2018
ENA
97
-
Circularized chromosome conformation capture (4C-seq) in A549 and U2OS cells stably expressing rat GR
4C
Homo sapiens
4
12/04/2018
ENA
88
-
RNA Sequencing of Adamantinomatous Craniopharyngioma
RNA-seq of coding RNA
Homo sapiens
24
11/04/2018
ENA
142
-
Laser Capture Microdissection and RNA Sequencing Human Adamantinomatous Craniopharyngioma
RNA-seq of coding RNA
Homo sapiens
8
11/04/2018
ENA
117
-
IL-17A treatment of mouse primary colonic epithelial spheroids in 3 differentiation states
transcription profiling by array
Mus musculus
24
10/04/2018
-
83
-
Rat-CHTP1.2-Experiment
transcription profiling by array
Rattus norvegicus
79
10/04/2018
74
-
Systems toxicology assessment of CHTP1.2 [Lung Data]
transcription profiling by array
Rattus norvegicus
70
10/04/2018
72
-
Systems toxicology assessment of CHTP1.2 [Liver Data]
transcription profiling by array
Rattus norvegicus
83
10/04/2018
65
-
Changes in nitrogen availability lead to a reprogramming of pyruvate metabolism
transcription profiling by array
Hordeum vulgare
15
09/04/2018
34
-
RNA-seq of Streptomyces coelicolor and Streptomyces davawensis including a dodecin gene deletion variant in response to plumbagin treatment
RNA-seq of coding RNA
Streptomyces coelicolor A3(2), Streptomyces davaonensis JCM 4913
12
07/04/2018
-
ENA
77
-
ATAC-seq of oesophageal adenocarcinoma cell line MFD-1
ATAC-seq
Homo sapiens
2
06/04/2018
-
ENA
63
-
RNA-seq to investigate how human-specific Notch2 paralogs expand cortical neurogenesis through regulation of Delta/Notch interactions
RNA-seq of coding RNA
Homo sapiens
11
06/04/2018
EGA
115
-
Transcription profiling by array of mouse primary hepatocytes from wild type and Xpa-/-p53+/- strains treated with carcinogens
transcription profiling by array
Mus musculus
114
06/04/2018
152
-
Transcriptome analysis of Huntington disease and control cerebral organoids at day 45 and 105 of differentiation
transcription profiling by array
Homo sapiens
15
05/04/2018
-
113
-
Single-molecule sequencing of maize and sorghum developmental tissues
RNA-seq of coding RNA
Sorghum bicolor, Zea mays
16
05/04/2018
-
ENA
108
-
RNA-sequencing of Sorghum tissues at different developmental stages (comparative transcriptome study)
RNA-seq of coding RNA
Sorghum bicolor
165
05/04/2018
-
ENA
121
-
RNA-sequencing of maize tissues at different developmental stages (comparative transcriptome study)
RNA-seq of coding RNA
Zea mays
36
05/04/2018
-
ENA
81
-
Microarrays of SK-N-AS cells at 37 and 40 degrees C treated with TNFalpha
transcription profiling by array
Homo sapiens
48
05/04/2018
127
-
Whole transcriptome assay of human urinary bladder cancer tumor samples from the central part and invasive front of individual tumors
transcription profiling by array
Homo sapiens
16
04/04/2018
-
153
-
Transcription profiling by microarray of A549 cells and Ext1 knock out or wild type mouse embryonic fibroblast cells co-cultured as spheroids
transcription profiling by array
Homo sapiens
12
04/04/2018
-
89
-
A reversible light and genotype dependent acquired thermolerance response protects the potato plant from excessive temperature (microarray data set 2)
transcription profiling by array
Solanum tuberosum
12
04/04/2018
-
56
-
A reversible light and genotype dependent acquired thermolerance response protects the potato plant from excessive temperature
transcription profiling by array
Solanum tuberosum
24
04/04/2018
-
53
-
RNA-seq of PCGF5 knockout and PCGF3/5 double knockout mouse embryonics stem cells bearing doxycycline-inducible Xist transgene on chromosome 16
RNA-seq of coding RNA
Mus musculus
16
04/04/2018
-
75
-
RNA-seq of PBMCs to investigate peptide vaccine immunotherapy biomarkers and response patterns in pediatric gliomas
RNA-seq of coding RNA
Homo sapiens
54
03/04/2018
-
ENA
148
-
Impaired spermatogenesis, muscle and erythrocyte function in U12 intron splicing-defective Zrsr1 mutant mice
RNA-seq of coding RNA
Mus musculus
18
03/04/2018
-
ENA
161
-
Microarray transcriptional analysis of leptin signaling knockdown and rescue in 72-hour post fertilization zebrafish
transcription profiling by array
Danio rerio
16
02/04/2018
90
-
Genomic copy number changes in breast cancers from patients exposed to ioinising radiation and non-exposed controls
comparative genomic hybridization by array
Homo sapiens
136
02/04/2018
-
93
-
Requirement for the Mediator kinase module for activation of super-enhancer associated genes in colon cancer cells
RNA-seq of coding RNA
Homo sapiens
24
02/04/2018
ENA
118
Compatible and incompatible infection of potato by nematode Globodera rostochiensis
RNA-seq of coding RNA
Solanum tuberosum
24
02/04/2018
-
ENA
113
Transcriptional profiling of pancreatic beta cells during maturation and with function-inactivating mutations
RNA-seq of coding RNA
Mus musculus
3
01/04/2018
-
ENA
71
-
3-D nasal cultures: Systems toxicological assessment of a candidate modified-risk tobacco product (nasal epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
362
01/04/2018
64
-
Single-cell RNA-seq analysis of cutaneous wound healing in mouse
RNA-seq of coding RNA from single cells
Mus musculus
2534
01/04/2018
ENA
91
-
Systematic interaction profiling of human bromodomain-containing proteins reveals complex modes of binder recruitment for BET proteins
ChIP-seq
Homo sapiens
6
01/04/2018
ENA
78
-
Deciphering the transcriptional adaptation of Corynebacterium glutamicum in transition from aerobiosis via microaerobiosis to anaerobiosis via RNA-seq
RNA-seq of coding RNA
Corynebacterium glutamicum ATCC 13032
6
31/03/2018
-
ENA
55
-
Illumina HumanmethylationEPIC array analysis in early synovial fibroblasts of RA patients before diagnosis
methylation profiling by array
Homo sapiens
10
31/03/2018
-
65
-
Illumina Humanmethylation450k array analysis in early synovial fibroblasts of RA patients before diagnosis
methylation profiling by array
Homo sapiens
10
31/03/2018
-
51
-
RNAseq analysis of colon and ileum tissue from naive wild type, MR1-/- and IL-17A-/- mice
RNA-seq of coding RNA
Mus musculus
24
31/03/2018
ENA
77
RNA-Seq analysis of MCV-miR-M1 mimic-transfected HEK293 cells
RNA-seq of coding RNA
Homo sapiens
9
31/03/2018
-
ENA
70
Alterations in the gene expression pattern of the pituitary is consistent with the domesticated phenotype in chickens
transcription profiling by array
Gallus gallus
24
31/03/2018
-
57
-
RNA-seq of Heliconius melpomene adult male and female heads (eye+brain), antennae, mouthparts (labial palps+proboscis) and legs
RNA-seq of coding RNA
Heliconius melpomene
10
31/03/2018
-
ENA
52
-
RNA-seq of whole female drosophila wounded and/or infected with Pseudomonas entomophila
RNA-seq of coding RNA
Drosophila melanogaster
22
31/03/2018
-
ENA
62
p62/SQSTM1 iCLIP in Human Huh-7 cells
RNA-seq of coding RNA
Homo sapiens
10
31/03/2018
-
ENA
61
-
Whole exome sequencing of mouse ovarian cancer cell line ID8
genotyping by high throughput sequencing
Mus musculus
1
31/03/2018
ENA
279
-
Differentially expressed genes in KPC Cxcr2 KO vs KPC mouse PDAC
RNA-seq of coding RNA
Mus musculus
10
31/03/2018
ENA
276
-
microRNA profiling by array of activated or apoptotic (UV-B treated) T-lymphocytes and corresponding released microvesicles derived from normal healthy donors and systemic lupus erythematosus (SLE) patients
microRNA profiling by array
Homo sapiens
8
31/03/2018
95
-
Role of mevalonate pathway intermediates in anticancer effect of statins
transcription profiling by array
Homo sapiens
20
31/03/2018
57
-
RNA-seq of from Drosophila melanogaster tissues: gut; fatbody; brain; ovary or thorax, fed different diets or diet supplemented with rapamycin
RNA-seq of coding RNA
Drosophila melanogaster
44
30/03/2018
-
ENA
107
-
Pancreatic tissue of 9 week old mice with genotypes Ptf1a-Cre;LSL-KrasG12D and Ptf1a-Cre;LSL-KrasG12D;Ptpn11fl/fl
transcription profiling by array
Mus musculus
6
30/03/2018
77
RNA-seq of pericarp of purple-grain wheat Luozhen No.1 of 20 days (D20) shading treatment after pollination, against 20 DAP untreated controls
RNA-seq of coding RNA
Triticum aestivum
2
30/03/2018
ENA
82
-
RNA-seq of transplanted pluripotent stem cells-derived human intestinal organoids upon mechanical lengthening and human jejunum tissues
RNA-seq of coding RNA
Homo sapiens
11
30/03/2018
ENA
61
-
Metabolic maturation during muscle stem cell differentiation is achieved by miR-1/133a-mediated inhibition of the Dlk-Dio3 mega gene cluster
transcription profiling by array
Mus musculus
13
30/03/2018
-
51
-
Transcription profiling by microarray of isolated murine satellite cell differentiation in vitro
transcription profiling by array
Mus musculus
3
30/03/2018
-
63
-
A multi-omics approach to decipher the complexity of drug resistance in diffuse large B-cell lymphoma
RNA-seq of coding RNA
Homo sapiens
17
29/03/2018
-
ENA
67
-
RNA-seq of the diatom Skeletonema marinoi grown in the presence or absence of the copepod Calanus finmarchicus
RNA-seq of coding RNA
Skeletonema marinoi
12
29/03/2018
-
ENA
59
-
Transcriptional analysis using E13.5 mouse eyes of TGFb2/GDNF mutants compared to WT
transcription profiling by array
Mus musculus
6
29/03/2018
-
55
-
Gene array of human mammary epithelial cell HMEC transfected with miR-106a-3p mimic against transfected control mimic
transcription profiling by array
Homo sapiens
6
28/03/2018
-
56
Whole genome microarray of bendiocarb-resistant An. gambiae mosquitoes from Uganda
transcription profiling by array
Anopheles gambiae S
40
28/03/2018
-
52
-
Transcription profiling by array of resting memory OT-I T_CXCR4 or OT-I T_Control cells isolated from the spleen 90 days following DC vaccination
transcription profiling by array
Mus musculus
6
28/03/2018
42
-
Peripheral tissue instruction is the primary determinant of CD8+ T cell pathogenicity: transcription profiling by RNA-seq of CD8+ effector T cells isolated from the blood and skin of HSCT patients developing acute pattern GVHD
RNA-seq of coding RNA
Homo sapiens
15
28/03/2018
ENA
84
-
Peripheral tissue instruction is the primary determinant of CD8+ T cell pathogenicity: transcription profiling by array of donor CD8+ effector T cells isolated from the secondary lymphoid organs, blood and GVHD-target organs at D+7 post-transplant (FTY720)
transcription profiling by array
Mus musculus
9
28/03/2018
44
-
Peripheral tissue instruction is the primary determinant of CD8+ T cell pathogenicity: transcription profiling by array of donor CD8+ effector T cells isolated from the secondary lymphoid organs, blood and GVHD-target organs at D+6 post-transplant (F>M model)
transcription profiling by array
Mus musculus
48
28/03/2018
45
-
RNA-seq of pericarp of Triticum aestivum Luozhen No.1, field study in Tai’an (China) at 15 and 20 days post pollination in response to shading treatment after pollination compared to untreated controls
RNA-seq of coding RNA
Triticum aestivum
8
26/03/2018
ENA
86
-
Small RNA-seq of quiescent, activated of differentiated mouse skeletal muscle stem cells
microRNA profiling by high throughput sequencing
Mus musculus
7
24/03/2018
-
ENA
94
-
RNAseq of peripheral blood mononuclear cells from related Hyperimmunoglobinemia D patients presenting with different phenotypes
RNA-seq of coding RNA
Homo sapiens
16
23/03/2018
-
ENA
78
-
Transcriptional response of Arabidopsis thaliana to exogenous application of pipecolic acid
RNA-seq of coding RNA
Arabidopsis thaliana
20
23/03/2018
-
ENA
61
A microarray meta-dataset of non-small cell lung cancer
transcription profiling by array
Homo sapiens
1118
23/03/2018
-
304
-
Targeting NAT10 enhances healthspan and lifespan in a mouse model of human accelerated aging syndrome
RNA-seq of coding RNA
Mus musculus
12
22/03/2018
-
ENA
102
-
Dam-specific RNA-seq
RNA-seq of coding RNA
Mycoplasma pneumoniae
5
22/03/2018
-
ENA
55
-
Affymetrix gene expression array (mouse 2.0) of sorted undifferentiated spermatogonia in inducible Miwi2 knock-out model
transcription profiling by array
Mus musculus
8
21/03/2018
-
75
-
Targeted sequencing of 49 primary medulloblastoma samples using Illumina TruSight Tumor 15 assay
DNA-seq
Homo sapiens
49
20/03/2018
-
ENA
140
-
Transcriptome-wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure
RNA-seq of coding RNA
Cyclopterus lumpus
13
20/03/2018
ENA
94
-
Transcriptional profiling of E. coli K-12 and E. coli O157 (Sakai) following heat shock at 45 degree celsius
transcription profiling by array
Escherichia coli
6
20/03/2018
56
-
Genome-Wide Translation Profiling by Ribosome-Bound tRNA Capture
RNA-seq of non coding RNA
Saccharomyces cerevisiae
244
19/03/2018
-
ENA
162
-
ChIp-seq of HeLa cells with anti-glucocorticoid (GR) antibodies
ChIP-seq
Homo sapiens
8
19/03/2018
ENA
89
-
Microglia have a more extensive and divergent response to interferon-alpha compared with astrocytes
transcription profiling by array
Mus musculus
8
18/03/2018
60
-
DNA sequencing of Arabidopsis thaliana nrpd1-3 background with novel insertions of LTR retrotransposon ONSEN/COPIA78
DNA-seq
Arabidopsis thaliana
11
18/03/2018
-
ENA
66
-
DNA sequencing of Arabidopsis thaliana wild-type and nrpd1-3 under control or heat stress
DNA-seq
Arabidopsis thaliana
4
18/03/2018
-
ENA
57
-
Saccharomyces cerevisiae transcriptome analysis of conditional yjr141w-psd mutant compared to control strain
transcription profiling by array
Saccharomyces cerevisiae
12
18/03/2018
-
63
Identifying crossover locations in Arabidopsis thaliana wild-type Col x Ler F2 populations using genotyping by sequencing
genotyping by high throughput sequencing
Arabidopsis thaliana
74
17/03/2018
-
ENA
47
-
RNA seq of fluid shear stress treated mouse renal epithelial cells
RNA-seq of coding RNA
Mus musculus
8
15/03/2018
ENA
59
Exomes of human leukemic JMML (Juvenile MyeloMonocytic Leukemia) xenografts in NSG or NSG-S mice (samples enriched in hCD45)
genotyping by high throughput sequencing
Homo sapiens, Mus musculus
26
15/03/2018
-
ENA
63
-
Role of mTOR signaling in mesenchamyl tissue response to inflammation in rheumatoid arthritis
transcription profiling by array
Homo sapiens
20
15/03/2018
-
87
-
Transcription profiling by array of liver from patients with varying stages of non-alcoholic fatty liver disease
transcription profiling by array
Homo sapiens
88
15/03/2018
212
-
RNAseq study (root and shoot) of Holcus lanatus ecotypes selected from two widely contrasting habitats, acid bog (pH 3.5) or limestone quarry spoil (pH 7.5)
RNA-seq of coding RNA
Holcus lanatus
39
15/03/2018
-
ENA
101
-
Agilent CGH + SNP array in 7 tumoral samples of Juvenile Myelomonocytic Leukemia (JMML)
comparative genomic hybridization by array
Homo sapiens
7
14/03/2018
-
59
-
Exomes of human leukemic JMML (Juvenile MyeloMonocytic Leukemia) cells and paired fibroblasts (germline controls) when available
genotyping by high throughput sequencing
Homo sapiens
28
14/03/2018
-
ENA
65
-
RNA-seq of sciatic nerve from mice expressing the transcription factor Miz1 with deletion of the POZ domain
RNA-seq of coding RNA
Mus musculus
8
14/03/2018
-
ENA
65
Neochloris oleoabundans under salt and nitrogen stress
RNA-seq of coding RNA
Neochloris oleoabundans
8
14/03/2018
-
ENA
88
-
Microarray analysis of eyes only from 23-hpf wild-type and pitx2M64* homozygous mutant zebrafish embryos
transcription profiling by array
Danio rerio
6
13/03/2018
-
47
-
Diurnal gene expression in Populus tremula x P. tremuloides wild type and lhy RNAi line 10
transcription profiling by array
Populus tremula x Populus tremuloides
26
13/03/2018
144
-
Whole-Genome Gene Expression Bead Array analysis of Toll-like receptor 2/8 stimulated human monocytes
transcription profiling by array
Homo sapiens
72
09/03/2018
-
47
-
Defective germline reprogramming rewires the spermatogonial transcriptome
Bisulfite-seq
Mus musculus
3
09/03/2018
ENA
51
-
Comparison of the Biological Effects of Long-Term Treatment of Human Bronchial Epithelial Cells with 3R4F Cigarette Smoke or THS2.2 Aerosol Total Particulate Matter (microRNA data)
transcription profiling by array
Homo sapiens
80
08/03/2018
60
-
Transcription profiling by array to investigate the pattern of gene expression of B cells derived from Galectin-3 knockout mice
transcription profiling by array
Mus musculus
12
08/03/2018
-
81
-
Comparison of the Biological Effects of Long-Term Treatment of Human Bronchial Epithelial Cells with 3R4F Cigarette Smoke or THS2.2 Aerosol Total Particulate Matter (mRNA data)
transcription profiling by array
Homo sapiens
75
08/03/2018
79
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (buccal epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
262
07/03/2018
36
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (buccal epithelial cells-mRNA dataset)
transcription profiling by array
Homo sapiens
251
07/03/2018
52
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (gingival epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
192
07/03/2018
37
-