{"id":15,"date":"2021-11-23T15:47:40","date_gmt":"2021-11-23T15:47:40","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/home\/"},"modified":"2024-12-10T10:59:31","modified_gmt":"2024-12-10T10:59:31","slug":"home","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/","title":{"rendered":"Home"},"content":{"rendered":"
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The Functional Genomics Team develops and maintains resources, tools, and workflows to support the submission, analysis, and visualisation of functional genomics data.<\/h1> <\/div>\n
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The team is responsible for the Expression Atlas<\/strong>, which provides curated insights into gene expression across diverse biological conditions and scales, from bulk to single-cell data.<\/p>\n\n\n\n

Our team supports FAIR data principles and promotes data reuse through the curation of functional genomics data submissions to the ArrayExpress<\/strong> collection in BioStudies, using the Annotare<\/strong> submission tool<\/a>.<\/p>\n\n\n\n

With expertise spanning biology, bioinformatics, and software engineering, we focus on robust data curation, standardised reanalysis pipelines, and accessible visualisations. Committed to advancing open science, we also contribute to the development of community standards and collaborate with EMBL-EBI\u2019s training programme to deliver courses, workshops, and tools that help scientists unlock the full potential of functional genomics data.<\/p>\n<\/div>\n\n\n\n

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\n Data resources \n <\/path>\n <\/svg><\/a><\/h2><\/div>\n
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\n \n \n \"Expression\n <\/a>\n \n

\n Expression Atlas<\/a>\n <\/h3>\n \n

\n The Expression Atlas is an added-value database based on re-analysis of (single cell\/bulk RNA-seq and microarray) gene and protein expression data from EMBL-EBI\u2019s ArrayExpress and PRIDE archives respectively, as well as from external sources.\u00a0It shows you which genes\/proteins are expressed under dif\u2026\n <\/p>\n <\/article>\n <\/div>\n <\/div>\n

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\n \n \n \"ArrayExpress\n <\/a>\n \n

\n ArrayExpress Archive of Functional Genomics Data<\/a>\n <\/h3>\n \n

\n The ArrayExpress Archive is a database of functional genomics experiments, including gene expression, where you can query and download data collected to MIAME and MINSEQE standards. ArrayExpress is one of three internatinoal repositories recommended by many journals for microarray and RNAseq functio\u2026\n <\/p>\n <\/article>\n <\/div>\n <\/div>\n

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\n \n Latest EMBL-EBI Jobs \n <\/path>\n <\/svg>\n <\/a>\n <\/h2>\n <\/div>\n
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\n Software Development Project Lead<\/a>\n <\/h3>\n

\n\n Technology in EMBL-EBI Hinxton<\/a>\n \n <\/p>\n

\n Your role\u00a0Join EMBL's European Bioinformatics Institute (EMBL-EBI) and lead the engineering team behind one of the world's largest and most widely used biomedical literature resources. As Software Development Project Lead, you will provide technical leadership for Europe PMC, a globally recognised o…\n <\/p>\n

\n \n Closes on 29th October.<\/span>\n <\/span>\n Posted 7th October 2026\n <\/p>\n Edit<\/a>\n\n <\/article>\n <\/div>\n\n<\/div>\n<\/div>\n\n\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":11,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-15","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/wp-json\/wp\/v2\/pages\/15","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/wp-json\/wp\/v2\/users\/11"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/wp-json\/wp\/v2\/comments?post=15"}],"version-history":[{"count":21,"href":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/wp-json\/wp\/v2\/pages\/15\/revisions"}],"predecessor-version":[{"id":19563,"href":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/wp-json\/wp\/v2\/pages\/15\/revisions\/19563"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/wp-json\/wp\/v2\/media?parent=15"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/about\/teams\/gene-expression\/wp-json\/wp\/v2\/embl_taxonomy?post=15"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}