Rodrigo Lopez

Rodrigo Lopez

Head of Web Production

Rodrigo Lopez joined EMBL-EBI in 1996 as a systems administrator responsible for the deployment of scientific computing and became the External Services Team Leader in 2002. His Web Production team is responsible for the administration of the web infrastructure, development of core software services such as the EBI search engine and EMBL-EBI's job dispatcher, through which many sequence analysis tools run. Many project teams, both externally and within EMBL-EBI, depend on these developments. Rodrigo's team provides institute-wide support and advice on best practises to users. They are heavily involved in the support and in both technical and scientific training of the core software and systems they maintain. 

BSc In Veterinary Medicine, 1984, MSc Molecular Toxicology and Informatics 1987, University of Oslo. At EMBL-EBI since 1995

ORCID iD: 0000-0003-1256-7306

Tel:+44 (0)1223 494 423 / Fax:+44 (0)1223 494 468

Web production

The Web production team, led by Rodrigo Lopez, focuses on three major areas of service: developing and providing platforms for web services; maintaining web infrastructure; and providing robust and secure frameworks for deploying public bioinformatics services. The team has developed and maintains the EBI search engine and the job dispatcher framework as well as their corresponding REST/SOAP Web Services. Web production also provides access to core services for project management (document management, project documentation and issue tracking, source code control) and user support.

Publications

2015

The InterPro protein families database: the classification resource after 15 years.
Mitchell A, Chang HY, Daugherty L, Fraser M, Hunter S, Lopez R, McAnulla C, McMenamin C, Nuka G, Pesseat S, Sangrador-Vegas A, Scheremetjew M, Rato C, Yong SY, Bateman A, Punta M, Attwood TK, Sigrist CJ, Redaschi N, Rivoire C, Xenarios I, Kahn D, Guyot D, Bork P, Letunic I, Gough J, Oates M, Haft D, Huang H, Natale DA, Wu CH, Orengo C, Sillitoe I, Mi H, Thomas PD, Finn RD.
Nucleic acids research Volume 43 (2015) p.D213-21

UniProt: a hub for protein information.
UniProt Consortium.
Nucleic acids research Volume 43 (2015) p.D204-12

The EMBL-EBI bioinformatics web and programmatic tools framework.
Li W, Cowley A, Uludag M, Gur T, McWilliam H, Squizzato S, Park YM, Buso N, Lopez R.
Nucleic acids research Volume 43 (2015) p.W580-4

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI.
Squizzato S, Park YM, Buso N, Gur T, Cowley A, Li W, Uludag M, Pundir S, Cham JA, McWilliam H, Lopez R.
Nucleic acids research Volume 43 (2015) p.W585-8

Content discovery and retrieval services at the European Nucleotide Archive.
Silvester N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Ten Hoopen P, Kay S, Leinonen R, Li W, Liu X, Lopez R, Pakseresht N, Pallreddy S, Plaister S, Radhakrishnan R, Rossello M, Senf A, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.
Nucleic acids research Volume 43 (2015) p.D23-9

2014

Using EMBL-EBI Services via Web Interface and Programmatically via Web Services.
Lopez R, Cowley A, Li W, McWilliam H.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] Volume 48 (2014) p.3.12.1-50

InterProScan 5: genome-scale protein function classification.
Jones P, Binns D, Chang HY, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G, Pesseat S, Quinn AF, Sangrador-Vegas A, Scheremetjew M, Yong SY, Lopez R, Hunter S.
Bioinformatics (Oxford, England) Volume 30 (2014) p.1236-1240

Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data.
Poux S, Magrane M, Arighi CN, Bridge A, O'Donovan C, Laiho K, UniProt Consortium.
Database : the journal of biological databases and curation Volume 2014 (2014) p.bau016

Assembly information services in the European Nucleotide Archive.
Pakseresht N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Gur T, Jang M, Kay S, Leinonen R, Li W, Liu X, Lopez R, McWilliam H, Oisel A, Pallreddy S, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Squizzato S, ten Hoopen P, Toribio AL, Vaughan D, Zalunin V, Cochrane G.
Nucleic acids research Volume 42 (2014) p.D38-43

Activities at the Universal Protein Resource (UniProt).
UniProt Consortium.
Nucleic acids research Volume 42 (2014) p.D191-8

2013

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.
Ison J, Kalas M, Jonassen I, Bolser D, Uludag M, McWilliam H, Malone J, Lopez R, Pettifer S, Rice P.
Bioinformatics (Oxford, England) Volume 29 (2013) p.1325-1332

IPD--the Immuno Polymorphism Database.
Robinson J, Halliwell JA, McWilliam H, Lopez R, Marsh SG.
Nucleic acids research Volume 41 (2013) p.D1234-40

Facing growth in the European Nucleotide Archive.
Cochrane G, Alako B, Amid C, Bower L, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, Pakseresht N, Pallreddy S, Park Y, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Ten Hoopen P, Toribio A, Vaughan D, Zalunin V.
Nucleic acids research Volume 41 (2013) p.D30-5

The IMGT/HLA database.
Robinson J, Halliwell JA, McWilliam H, Lopez R, Parham P, Marsh SG.
Nucleic acids research Volume 41 (2013) p.D1222-7

The annotation-enriched non-redundant patent sequence databases.
Li W, Kondratowicz B, McWilliam H, Nauche S, Lopez R.
Database : the journal of biological databases and curation Volume 2013 (2013) p.bat005

The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics.
de Matos P, Cham JA, Cao H, Alcántara R, Rowland F, Lopez R, Steinbeck C.
BMC bioinformatics Volume 14 (2013) p.103

Analysis Tool Web Services from the EMBL-EBI.
McWilliam H, Li W, Uludag M, Squizzato S, Park YM, Buso N, Cowley AP, Lopez R.
Nucleic acids research Volume 41 (2013) p.W597-600

The EBI enzyme portal.
Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, Kleywegt GJ, Hermjakob H, O'Donovan C, Martín MJ, Thornton JM, Steinbeck C.
Nucleic acids research Volume 41 (2013) p.D773-80

2012

InterPro in 2011: new developments in the family and domain prediction database.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJ, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY.
Nucleic acids research Volume 40 (2012) p.D306-12

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.
Schneider MV, Walter P, Blatter MC, Watson J, Brazas MD, Rother K, Budd A, Via A, van Gelder CW, Jacob J, Fernandes P, Nyrönen TH, De Las Rivas J, Blicher T, Jimenez RC, Loveland J, McDowall J, Jones P, Vaughan BW, Lopez R, Attwood TK, Brooksbank C.
Briefings in bioinformatics Volume 13 (2012) p.383-389

PSI-Search: iterative HOE-reduced profile SSEARCH searching.
Li W, McWilliam H, Goujon M, Cowley A, Lopez R, Pearson WR.
Bioinformatics (Oxford, England) Volume 28 (2012) p.1650-1651

Reorganizing the protein space at the Universal Protein Resource (UniProt).
UniProt Consortium.
Nucleic acids research Volume 40 (2012) p.D71-5

2011

Ongoing and future developments at the Universal Protein Resource.
UniProt Consortium.
Nucleic acids research Volume 39 (2011) p.D214-9

UniProt Knowledgebase: a hub of integrated protein data.
Magrane M, UniProt Consortium.
Database : the journal of biological databases and curation Volume 2011 (2011) p.bar009

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.
Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG.
Molecular systems biology Volume 7 (2011) p.539

The IMGT/HLA database.
Robinson J, Mistry K, McWilliam H, Lopez R, Parham P, Marsh SG.
Nucleic acids research Volume 39 (2011) p.D1171-6

2010

Bioinformatics training: selecting an appropriate learning content management system--an example from the European Bioinformatics Institute.
Wright VA, Vaughan BW, Laurent T, Lopez R, Brooksbank C, Schneider MV.
Briefings in bioinformatics Volume 11 (2010) p.552-562

IPD--the Immuno Polymorphism Database.
Robinson J, Mistry K, McWilliam H, Lopez R, Marsh SG.
Nucleic acids research Volume 38 (2010) p.D863-9

Fast and efficient searching of biological data resources--using EB-eye.
Valentin F, Squizzato S, Goujon M, McWilliam H, Paern J, Lopez R.
Briefings in bioinformatics Volume 11 (2010) p.375-384

Improvements to services at the European Nucleotide Archive.
Leinonen R, Akhtar R, Birney E, Bonfield J, Bower L, Corbett M, Cheng Y, Demiralp F, Faruque N, Goodgame N, Gibson R, Hoad G, Hunter C, Jang M, Leonard S, Lin Q, Lopez R, Maguire M, McWilliam H, Plaister S, Radhakrishnan R, Sobhany S, Slater G, Ten Hoopen P, Valentin F, Vaughan R, Zalunin V, Zerbino D, Cochrane G.
Nucleic acids research Volume 38 (2010) p.D39-45

BioCatalogue: a universal catalogue of web services for the life sciences.
Bhagat J, Tanoh F, Nzuobontane E, Laurent T, Orlowski J, Roos M, Wolstencroft K, Aleksejevs S, Stevens R, Pettifer S, Lopez R, Goble CA.
Nucleic acids research Volume 38 (2010) p.W689-94

Non-redundant patent sequence databases with value-added annotations at two levels.
Li W, McWilliam H, de la Torre AR, Grodowski A, Benediktovich I, Goujon M, Nauche S, Lopez R.
Nucleic acids research Volume 38 (2010) p.D52-6

A new bioinformatics analysis tools framework at EMBL-EBI.
Goujon M, McWilliam H, Li W, Valentin F, Squizzato S, Paern J, Lopez R.
Nucleic acids research Volume 38 (2010) p.W695-9

2009

The IMGT/HLA database.
Robinson J, Waller MJ, Fail SC, McWilliam H, Lopez R, Parham P, Marsh SG.
Nucleic acids research Volume 37 (2009) p.D1013-7

Web services at the European Bioinformatics Institute-2009.
McWilliam H, Valentin F, Goujon M, Li W, Narayanasamy M, Martin J, Miyar T, Lopez R.
Nucleic acids research Volume 37 (2009) p.W6-10

InterPro: the integrative protein signature database.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C.
Nucleic acids research Volume 37 (2009) p.D211-5

Petabyte-scale innovations at the European Nucleotide Archive.
Cochrane G, Akhtar R, Bonfield J, Bower L, Demiralp F, Faruque N, Gibson R, Hoad G, Hubbard T, Hunter C, Jang M, Juhos S, Leinonen R, Leonard S, Lin Q, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Plaister S, Radhakrishnan R, Robinson S, Sobhany S, Hoopen PT, Vaughan R, Zalunin V, Birney E.
Nucleic acids research Volume 37 (2009) p.D19-25

2008

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences.
Chica C, Labarga A, Gould CM, López R, Gibson TJ.
BMC bioinformatics Volume 9 (2008) p.229

Biological Data Resources at the EMBL-EBI
Lopez R.
Revista Colombiana de biotecnologia Volume 10 (2008) p.120–128

Data curation + process curation=data integration + science.
Goble C, Stevens R, Hull D, Wolstencroft K, Lopez R.
Briefings in bioinformatics Volume 9 (2008) p.506-517

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database.
Cochrane G, Akhtar R, Aldebert P, Althorpe N, Baldwin A, Bates K, Bhattacharyya S, Bonfield J, Bower L, Browne P, Castro M, Cox T, Demiralp F, Eberhardt R, Faruque N, Hoad G, Jang M, Kulikova T, Labarga A, Leinonen R, Leonard S, Lin Q, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Nardone F, Plaister S, Robinson S, Sobhany S, Vaughan R, Wu D, Zhu W, Apweiler R, Hubbard T, Birney E.
Nucleic acids research Volume 36 (2008) p.D5-12

2007

Clustal W and Clustal X version 2.0.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.
Bioinformatics (Oxford, England) Volume 23 (2007) p.2947-2948

New developments in the InterPro database.
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Gough J, Haft D, Hulo N, Hunter S, Kahn D, Kanapin A, Kejariwal A, Labarga A, Langendijk-Genevaux PS, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Nikolskaya AN, Orchard S, Orengo C, Petryszak R, Selengut JD, Sigrist CJ, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C.
Nucleic acids research Volume 35 (2007) p.D224-8

Web services at the European bioinformatics institute.
Labarga A, Valentin F, Anderson M, Lopez R.
Nucleic acids research Volume 35 (2007) p.W6-11

EMBL Nucleotide Sequence Database in 2006.
Kulikova T, Akhtar R, Aldebert P, Althorpe N, Andersson M, Baldwin A, Bates K, Bhattacharyya S, Bower L, Browne P, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, Hoad G, Kanz C, Lee C, Leinonen R, Lin Q, Lombard V, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Nardone F, Pastor MP, Plaister S, Sobhany S, Stoehr P, Vaughan R, Wu D, Zhu W, Apweiler R.
Nucleic acids research Volume 35 (2007) p.D16-20

2006

The Universal Protein Resource (UniProt): an expanding universe of protein information.
Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Mazumder R, O'Donovan C, Redaschi N, Suzek B.
Nucleic acids research Volume 34 (2006) p.D187-91

EMBL Nucleotide Sequence Database: developments in 2005.
Cochrane G, Aldebert P, Althorpe N, Andersson M, Baker W, Baldwin A, Bates K, Bhattacharyya S, Browne P, van den Broek A, Castro M, Duggan K, Eberhardt R, Faruque N, Gamble J, Kanz C, Kulikova T, Lee C, Leinonen R, Lin Q, Lombard V, Lopez R, McHale M, McWilliam H, Mukherjee G, Nardone F, Pastor MP, Sobhany S, Stoehr P, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R.
Nucleic acids research Volume 34 (2006) p.D10-5

2005

InterPro, progress and status in 2005.
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, Gough J, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McDowall J, Mitchell A, Nikolskaya AN, Orchard S, Pagni M, Ponting CP, Quevillon E, Selengut J, Sigrist CJ, Silventoinen V, Studholme DJ, Vaughan R, Wu CH.
Nucleic acids research Volume 33 (2005) p.D201-5

InterProScan: protein domains identifier.
Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, Apweiler R, Lopez R.
Nucleic acids research Volume 33 (2005) p.W116-20

The Universal Protein Resource (UniProt).
Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.
Nucleic acids research Volume 33 (2005) p.D154-9

The EMBL Nucleotide Sequence Database.
Kanz C, Aldebert P, Althorpe N, Baker W, Baldwin A, Bates K, Browne P, van den Broek A, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, Gamble J, Diez FG, Harte N, Kulikova T, Lin Q, Lombard V, Lopez R, Mancuso R, McHale M, Nardone F, Silventoinen V, Sobhany S, Stoehr P, Tuli MA, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R.
Nucleic acids research Volume 33 (2005) p.D29-33

SOAP-based services provided by the European Bioinformatics Institute.
Pillai S, Silventoinen V, Kallio K, Senger M, Sobhany S, Tate J, Velankar S, Golovin A, Henrick K, Rice P, Stoehr P, Lopez R.
Nucleic acids research Volume 33 (2005) p.W25-8

2004

Public web-based services from the European Bioinformatics Institute.
Harte N, Silventoinen V, Quevillon E, Robinson S, Kallio K, Fustero X, Patel P, Jokinen P, Lopez R, European Bioinformatics Institute.
Nucleic acids research Volume 32 (2004) p.W3-9

The EMBL Nucleotide Sequence Database.
Kulikova T, Aldebert P, Althorpe N, Baker W, Bates K, Browne P, van den Broek A, Cochrane G, Duggan K, Eberhardt R, Faruque N, Garcia-Pastor M, Harte N, Kanz C, Leinonen R, Lin Q, Lombard V, Lopez R, Mancuso R, McHale M, Nardone F, Silventoinen V, Stoehr P, Stoesser G, Tuli MA, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R.
Nucleic acids research Volume 32 (2004) p.D27-30

UniProt archive.
Leinonen R, Diez FG, Binns D, Fleischmann W, Lopez R, Apweiler R.
Bioinformatics (Oxford, England) Volume 20 (2004) p.3236-3237

UniProt: the Universal Protein knowledgebase.
Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.
Nucleic acids research Volume 32 (2004) p.D115-9

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.
Nucleic acids research Volume 32 (2004) p.D262-6

2003

The InterPro Database, 2003 brings increased coverage and new features.
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM.
Nucleic acids research Volume 31 (2003) p.315-318

Public services from the European Bioinformatics Institute.
Lopez R, Duggan K, Harte N, Kibria A.
Briefings in bioinformatics Volume 4 (2003) p.332-340

[Initial analysis of complete genome sequences of SARS coronavirus].
Chen YJ, Gao G, Bao YM, Lopez R, Wu JM, Cai T, Ye ZQ, Gu XC, Luo JC.
Yi chuan xue bao = Acta genetica Sinica Volume 30 (2003) p.493-500

WU-Blast2 server at the European Bioinformatics Institute.
Lopez R, Silventoinen V, Robinson S, Kibria A, Gish W.
Nucleic acids research Volume 31 (2003) p.3795-3798

The European Bioinformatics Institute's data resources.
Brooksbank C, Camon E, Harris MA, Magrane M, Martin MJ, Mulder N, O'Donovan C, Parkinson H, Tuli MA, Apweiler R, Birney E, Brazma A, Henrick K, Lopez R, Stoesser G, Stoehr P, Cameron G.
Nucleic acids research Volume 31 (2003) p.43-50

Multiple sequence alignment with the Clustal series of programs.
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD.
Nucleic acids research Volume 31 (2003) p.3497-3500

The EMBL Nucleotide Sequence Database: major new developments.
Stoesser G, Baker W, van den Broek A, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Mancuso R, Nardone F, Stoehr P, Tuli MA, Tzouvara K, Vaughan R.
Nucleic acids research Volume 31 (2003) p.17-22

The European Bioinformatics Institute web site: a new view.
Lopez R, Robinson S, Kibria A, Harte N, Patel G, Harper R, Quevillon E, Silventoinen V, Kallio K, Jokinen P.
Bioinformatics (Oxford, England) Volume 19 (2003) p.546-547

2002

InterPro: an integrated documentation resource for protein families, domains and functional sites.
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, Gouzy J, Griffith-Jones S, Haft D, Hermjakob H, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Orchard S, Pagni M, Peyruc D, Ponting CP, Servant F, Sigrist CJ, InterPro Consortium.
Briefings in bioinformatics Volume 3 (2002) p.225-235

The EMBL Nucleotide Sequence Database.
Stoesser G, Baker W, van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Redaschi N, Stoehr P, Tuli MA, Tzouvara K, Vaughan R.
Nucleic acids research Volume 30 (2002) p.21-26

The EBI SRS server-new features.
Zdobnov EM, Lopez R, Apweiler R, Etzold T.
Bioinformatics (Oxford, England) Volume 18 (2002) p.1149-1150

The EBI SRS server--recent developments.
Zdobnov EM, Lopez R, Apweiler R, Etzold T.
Bioinformatics (Oxford, England) Volume 18 (2002) p.368-373

2001

The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM.
Nucleic acids research Volume 29 (2001) p.37-40

The EMBL nucleotide sequence database.
Stoesser G, Baker W, van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Lombard V, Lopez R, Parkinson H, Redaschi N, Sterk P, Stoehr P, Tuli MA.
Nucleic acids research Volume 29 (2001) p.17-21

2000

The EMBL nucleotide sequence database.
Baker W, van den Broek A, Camon E, Hingamp P, Sterk P, Stoesser G, Tuli MA.
Nucleic acids research Volume 28 (2000) p.19-23

InterPro--an integrated documentation resource for protein families, domains and functional sites.
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM, InterPro Consortium.
Bioinformatics (Oxford, England) Volume 16 (2000) p.1145-1150

1999

The EMBL Nucleotide Sequence Database.
Stoesser G, Tuli MA, Lopez R, Sterk P.
Nucleic acids research Volume 27 (1999) p.18-24

1994

Evaluation of the exon predictions of the GRAIL software.
Lopez R, Larsen F, Prydz H.
Genomics Volume 24 (1994) p.133-136

1992

Database contamination.
Lopez R, Kristensen T, Prydz H.
Nature Volume 355 (1992) p.211

A type-III DNA restriction and modification system in Bacillus cereus?
Hegna IK, Karlstrøm ES, Lopez R, Kristensen T, Kolstø AB.
Gene Volume 114 (1992) p.149-150

Cloning of a gene from Bacillus cereus with homology to the mreB gene from Escherichia coli.
Narahara A, Naterstad K, Kristensen T, Lopez R, Bork P, Kolstø AB.
Gene Volume 122 (1992) p.181-185

CpG islands as gene markers in the human genome.
Larsen F, Gundersen G, Lopez R, Prydz H.
Genomics Volume 13 (1992) p.1095-1107

Team members

Simone Federico Maria Badoer
Nicola Buso
Szymon Chojnacki
Andrew Cowley
Andrea Cristofori
Tamer Gur
Joon Lee
Philip Lewis
Weizhong Li
Youngmi Park
Silvano Squizzato
Kelly Walsh