New Single Cell Expression Atlas release is live

Single Cell Expression Atlas release

New Single Cell Expression Atlas release is live

11 Jul 2019 - 09:09

The latest release of the Single Cell Expression Atlas is now available! It features 99 individually curated single-cell RNA-seq experiments over 11 different species. The analysis pipelines have been updated and now process data from droplet-based technologies such as 10x Genomics and Drop-Seq.

RNA-Seq alignment and quantification are handled by Alevin, while filtering and clustering is handled by Scanpy. Links to both, including the workflows to run the analysis pipelines yourself  a landmark for EMBL-EBI resources  can be found in the Single Cell Expression Atlas release notes.

A number of featured landmark studies are also available such as Tabula muris and the Malaria Cell Atlas.

Highlights also include:

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