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WSPhobius Clients

Important

On Tuesday 20th September 2011 the WSPhobius service, used by these clients, was decommissioned and replaced by the following services:

The service documentation and clients below are historical and provided solely for reference purposes.

Description

This client is for prediction of transmembrane topology and signal peptides from the amino acid sequence of a protein.

For more information about this tool see:

Web Service

For details of the service used by these clients see Phobius Web Service.

C# .NET Client

.NET runtime

The Microsoft .NET runtime is already installed on most MS Windows systems. The Microsoft .NET runtime is available via Microsoft Update or as a download (see http://msdn.microsoft.com/netframework/).

For MacOS X, Linux and other non-Windows systems see Mono or DotGNU.

Get the client

Download the C# client:

Run without arguments to get a usage summary:

wsphobius.exe


Java Client

Dependencies

Download and unzip the library files lib-1.4.zip and add the jars to the Java classpath.

Get the client

Download the Java client:

To get usage information run the client without arguments:

java -Djava.ext.dirs=lib -jar WSPhobius.jar


Perl Client

Install SOAP::Lite

To run the Perl client you need to install SOAP::Lite. SOAP::Lite is a collection of Perl modules which provide a simple and lightweight interface to the Simple Object Access Protocol (SOAP) for both client and server applications. This client requires SOAP::Lite version 0.60.

Get the client

Download the Perl client: phobius.pl

To get usage information run without arguments:

perl phobius.pl

Workflows

Workflow engines such as Taverna and Triana offer a simple way of combining individual web services into complex applications.

Taverna

A basic workflow showing how to use WSPhobius can be found on myExperiment.

 
services/archive/pfa/wsphobius_clients.txt · Last modified: 2013/04/23 16:32 by hpm
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