EMBL-EBI to be HTTPS by default from 1st December

On the 1st December the majority of services hosted on www.ebi.ac.uk will be served over HTTPS by default. Services that are becoming HTTPS by default will automatically redirect users accessing the site on insecure HTTP URLs to secure HTTPS URLs.
Users of EMBL-EBI services may wish to update links, bookmarks or API clients to use the HTTPS URLs.


Service Retirement

Wise2DBA and Promoterwise are scheduled for retirement on 15th April 2018. Alternatives can be found at Exonerate, BWA or BLAT. If you have any concerns, please contact us via support.

Thornton Group Structural Tools

Tools from the Thornton research group. Additional resources are available at the Thornton Group.

MACiE

Annotated enzyme reaction mechanisms.

MACiE

PDBsum

Structural analysis, including PROCHECK, for user-submitted PDB file.

PDBsum

PoreLogo

Visualization of sequence and conservation of pore-lining residues in transmembrane protein structures.

PoreLogo

PoreWalker

Detection and characterisation of transmembrane protein channels.

PoreWalker

ProFunc

Protein function prediction from protein 3D structure.

ProFunc

SAS

Sequence Annotated by Structure.

SAS

Scorecons

Calculation of residue conservation from multiple sequence alignment.

Scorecons

PDBe Tools

Tools from the Protein Data Bank in Europe. Additional resources are available at the PDBe homepage.

PDBeFold

Secondary Structure Matching service (SSM) for the interactive comparison, alignment and superposition of protein structures in 3D.

PDBeFold

PDBeMotif

Flexible 3D search and analysis of ligands, sequence, structural features and interaction motifs.

PDBeMotif

PDBePISA

Exploration of macromolecular (protein, DNA/RNA and ligand) interfaces and prediction of quarternary structures.

PDBePISA