Tools > Pairwise Sequence Alignment > EMBOSS Water
We will update NCBI Blast to version 2.7.1+ on the 29th May 2018. In the meantime you can try the new version on wwwdev.ebi.ac.uk/Tools/sss/ncbiblast. If you have any concerns, please contact us via support.
EMBOSS Water uses the Smith-Waterman algorithm (modified for speed enhancments) to calculate the local alignment of a sequence to one or more other sequences.
This tool can be used in the following contexts: