EMBOSS Water < Pairwise Sequence Alignment

Pairwise Sequence Alignment

EMBOSS Water uses the Smith-Waterman algorithm (modified for speed enhancements) to calculate the local alignment of two sequences.

STEP 1 - Enter your protein sequences

Enter a pair of

sequences. Enter or paste your first protein sequence in any supported format:

Or, upload a file: Use a example sequence | Clear sequence | See more example inputs

AND

Enter or paste your second protein sequence in any supported format:

Or, upload a file:

STEP 2 - Set your pairwise alignment options

OUTPUT FORMAT

STEP 3 - Submit your job

Be notified by email (Tick this box if you want to be notified by email when the results are available)

EMAIL:

TITLE: If available, the title will be included in the subject of the notification email and can be used as a way to identify your analysis

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