Pairwise Sequence Alignment
EMBOSS Water uses the Smith-Waterman algorithm (modified for speed enhancements) to calculate the local alignment of two sequences.
If you use this service, please consider citing the following publication: Search and sequence analysis tools services from EMBL-EBI in 2022
Please read the provided Help & Documentation and FAQs before seeking help from our support staff. If you have any feedback or encountered any issues please let us know via EMBL-EBI Support. If you plan to use these services during a course please contact us. Read our Privacy Notice if you are concerned with your privacy and how we handle personal information.